fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G03660 WOX11 WUSCHEL related homeobox 11 (.1.2)

>AT3G03660.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstXI, BstYI, BstZ17I, BtgI, BtrI, BtsI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PspOMI, PvuI, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, Tth111I, XbaI, XcmI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 211
AciI C|CGC 31, 57
AclI AA|CGTT 681
AgeI A|CCGGT 84
AluI AG|CT 282, 295, 353, 425, 520, 548, 758, 775
ApoI Pu|AATTPy 205
AvaI C|PyCGPuG 199
AvaII G|G[AT]CC 2, 91, 262
BalI TGG|CCA 501
BbvCI CC|TCAGC 75
BclI T|GATCA 582
BfaI C|TAG 423
BsaWI [AT]|CCGG[AT] 64, 84, 111
BslI CCNNNNN|NNGG 611
BsoBI C|PyCGPuG 199
Bsp1286I G[GAT]GC[CAT]|C 573
BspDI AT|CGAT 564
BsrFI Pu|CCGGPy 84, 251
BssKI |CCNGG 785
BstEII G|GTNACC 102
BstF5I GGATGNN| 452
BstNI CC|[AT]GG 785
BstUI CG|CG 211
Bsu36I CC|TNAGG 714
Cac8I GCN|NGC 424
Cfr10I [AG]|CCGG[TC] 84, 251
ClaI AT|CGAT 564
DdeI C|TNAG 74, 713
DpnI GA-CH3|TC 136, 581
DpnII |GATC 136, 581
EaeI Py|GGCCPu 501
EcoO109I PuG|GNCCPy 263
Fnu4HI GC|NGC 291, 297, 303
HaeIII GG|CC 500
HhaI GCG|C 210
HinP1I G|CGC 210
HincII GTPy|PuAC 157
HindIII A|AGCTT 776
HinfI G|ANTC 132, 482
HpaI GTT|AAC 157
HpaII C|CGG 63, 83, 110, 250
Hpy188I TCN|GA 269, 579, 641
Hpy99I CG[AT]CG| 267
HpyCH4III ACN|GT 145, 177, 621
HpyCH4IV A|CGT 680
HpyCH4V TG|CA 223, 292, 298, 705, 753
MboI |GATC 136, 581
MscI TGG|CCA 501
MseI T|TAA 156, 488
MslI CAPyNN|NNPuTG 368
MspA1I C[AC]G|C[GT]G 296, 305
MspI C|CGG 63, 83, 110, 250
MwoI GCNNNNN|NNGC 31, 297, 309, 472
N.BstNBI GAGTCNNNN|N 137
NheI G|CTAGC 424
NlaIII CATG| 475, 515, 670, 767, 801
NlaIV GGN|NCC 67, 92, 263, 789
NsiI ATGCA|T 754
PaeR7I C|TCGAG 199
PpuMI PuG|G[AT]CCPy 263
PsiI TTA|TAA 629
PspGI |CC[AT]GG 785
PstI CTGCA|G 293, 299
PvuII CAG|CTG 296
Sau3AI |GATC 136, 581
Sau96I G|GNCC 2, 91, 262
ScrFI CC|NGG 785
SfcI C|TPuPyAG 286, 293, 299
SmlI C|TPyPuAG 130, 199
Taqƒ¿I T|CGA 134, 198, 563
TfiI G|A[AT]TC 482
TliI C|TCGAG 199
TseI G|C[AT]GC 291, 297, 303
Tsp45I |GT[CG]AC 101, 328, 558, 651
Tsp509I |AATT 204, 410, 593
TspRI NNCA[CG]TGNN| 148
XhoI C|TCGAG 199
XmnI GAANN|NNTTC 86


Click here to view TAIR data

>AT3G03660.1 length:807
ATGGACCAAG AACAAACACC ACATAGCCCA ACCCGCCATA GTCGCTCACC 
50
CCCATCCTCC GCCTCCGGTT CCACCTCAGC AGAACCGGTT CGGTCCCGAT 
100
GGTCACCTAA ACCGGAACAA ATACTCATAC TTGAGTCGAT CTTCCACAGT 
150
GGTATGGTTA ACCCTCCCAA AGAAGAGACG GTAAGGATAA GAAAGATGCT 
200
CGAGAAATTT GGCGCGGTGG GAGATGCAAA TGTCTTCTAT TGGTTTCAAA 
250
ACCGGCGGTC AAGGTCCCGT CGGAGACAGC GACAGCTACA GGCTGCAGCT 
300
GCAGCAGCGG ACGCAACCAC CAACACTTGT GACCAGACTA TGATGGTGAG 
350
CAACAGCTTA CCACATCATA GTGGGAGTGA TTTGGGGTTT GGAGGTTGTA 
400
GCACTTCTTC TAATTACTTA TTTGCTAGCT CTTCTTCTTC TTATGGTGGT 
450
GGATGTGATA ATCAAAGCAA TAGTGGCATG GAGAATCTCT TAACAATGTC 
500
TGGCCAAATG AGTTACCATG AAGCTACTCA TCATCATTAT CAAAATCATA 
550
GCTCAAATGT CACATCGATT TTGTGCCCAT CTGATCAAAA CTCCAATTTT 
600
CAATACCAAC AAGGGGCTAT AACGGTGTTT ATAAACGGAG TTCCGACAGA 
650
AGTGACGAGA GGAGGAATAG ACATGAAAGC AACGTTTGGA GAAGATTTGG 
700
TTTTGGTGCA TTCCTCAGGT GTTCCTCTTC CTACTGATGA GTTTGGTTTT 
750
TTGATGCATA GCTTACAACA TGGTGAAGCT TATTTCCTGG TTCCAAGACA 
800
GACATGA
850

>AT3G03660.1 longest ORF length:268
MDQEQTPHSP TRHSRSPPSS ASGSTSAEPV RSRWSPKPEQ ILILESIFHS 
50
GMVNPPKEET VRIRKMLEKF GAVGDANVFY WFQNRRSRSR RRQRQLQAAA 
100
AAADATTNTC DQTMMVSNSL PHHSGSDLGF GGCSTSSNYL FASSSSSYGG 
150
GCDNQSNSGM ENLLTMSGQM SYHEATHHHY QNHSSNVTSI LCPSDQNSNF 
200
QYQQGAITVF INGVPTEVTR GGIDMKATFG EDLVLVHSSG VPLPTDEFGF 
250
LMHSLQHGEA YFLVPRQT
300