fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G03660 WOX11 WUSCHEL related homeobox 11 (.1.2)

>AT3G03660.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstXI, BstYI, BstZ17I, BtgI, BtrI, BtsI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PspOMI, PvuI, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, Tth111I, XbaI, XcmI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 211
AciI C|CGC 31, 57
AclI AA|CGTT 768
AgeI A|CCGGT 84
AluI AG|CT 282, 295, 353, 485, 508, 512, 607, 635, 845, 862
ApoI Pu|AATTPy 205
AvaI C|PyCGPuG 199
AvaII G|G[AT]CC 2, 91, 262
BalI TGG|CCA 588
BbvCI CC|TCAGC 75
BclI T|GATCA 669
BfaI C|TAG 510
BsaWI [AT]|CCGG[AT] 64, 84, 111
BslI CCNNNNN|NNGG 698
BsoBI C|PyCGPuG 199
Bsp1286I G[GAT]GC[CAT]|C 660
BspDI AT|CGAT 651
BsrFI Pu|CCGGPy 84, 251
BssKI |CCNGG 872
BstEII G|GTNACC 102
BstF5I GGATGNN| 539
BstNI CC|[AT]GG 872
BstUI CG|CG 211
Bsu36I CC|TNAGG 801
Cac8I GCN|NGC 511
Cfr10I [AG]|CCGG[TC] 84, 251
ClaI AT|CGAT 651
DdeI C|TNAG 74, 800
DpnI GA-CH3|TC 136, 668
DpnII |GATC 136, 668
EaeI Py|GGCCPu 588
EcoO109I PuG|GNCCPy 263
Fnu4HI GC|NGC 291, 297, 303
HaeIII GG|CC 587
HhaI GCG|C 210
HinP1I G|CGC 210
HincII GTPy|PuAC 157
HindIII A|AGCTT 863
HinfI G|ANTC 132, 569
HpaI GTT|AAC 157
HpaII C|CGG 63, 83, 110, 250
Hpy188I TCN|GA 269, 666, 728
Hpy99I CG[AT]CG| 267
HpyCH4III ACN|GT 145, 177, 708
HpyCH4IV A|CGT 767
HpyCH4V TG|CA 223, 292, 298, 792, 840
MboI |GATC 136, 668
MscI TGG|CCA 588
MseI T|TAA 156, 575
MslI CAPyNN|NNPuTG 368
MspA1I C[AC]G|C[GT]G 296, 305
MspI C|CGG 63, 83, 110, 250
MwoI GCNNNNN|NNGC 31, 297, 309, 559
N.BstNBI GAGTCNNNN|N 137
NheI G|CTAGC 511
NlaIII CATG| 562, 602, 757, 854, 888
NlaIV GGN|NCC 67, 92, 263, 876
NsiI ATGCA|T 841
PaeR7I C|TCGAG 199
PpuMI PuG|G[AT]CCPy 263
PsiI TTA|TAA 716
PspGI |CC[AT]GG 872
PstI CTGCA|G 293, 299
PvuII CAG|CTG 296
Sau3AI |GATC 136, 668
Sau96I G|GNCC 2, 91, 262
ScrFI CC|NGG 872
SfcI C|TPuPyAG 286, 293, 299
SmlI C|TPyPuAG 130, 199, 434
Taqƒ¿I T|CGA 134, 198, 650
TfiI G|A[AT]TC 569
TliI C|TCGAG 199
TseI G|C[AT]GC 291, 297, 303
Tsp45I |GT[CG]AC 101, 328, 645, 738
Tsp509I |AATT 204, 410, 680
TspRI NNCA[CG]TGNN| 148
XhoI C|TCGAG 199
XmnI GAANN|NNTTC 86


Click here to view TAIR data

>AT3G03660.2 length:894
ATGGACCAAG AACAAACACC ACATAGCCCA ACCCGCCATA GTCGCTCACC 
50
CCCATCCTCC GCCTCCGGTT CCACCTCAGC AGAACCGGTT CGGTCCCGAT 
100
GGTCACCTAA ACCGGAACAA ATACTCATAC TTGAGTCGAT CTTCCACAGT 
150
GGTATGGTTA ACCCTCCCAA AGAAGAGACG GTAAGGATAA GAAAGATGCT 
200
CGAGAAATTT GGCGCGGTGG GAGATGCAAA TGTCTTCTAT TGGTTTCAAA 
250
ACCGGCGGTC AAGGTCCCGT CGGAGACAGC GACAGCTACA GGCTGCAGCT 
300
GCAGCAGCGG ACGCAACCAC CAACACTTGT GACCAGACTA TGATGGTGAG 
350
CAACAGCTTA CCACATCATA GTGGGAGTGA TTTGGGGTTT GGAGGTTGTA 
400
GCACTTCTTC TAATTACTTA TTTGGTGGGT CATCTCAAGT TCCTTCCTTT 
450
TTTCTTGGTC TCTCTTCTTC TCCTTCTTCT TGTTCAAGCT CCTCTTCCAC 
500
TTCTTCTTCA GCTAGCTCTT CTTCTTCTTA TGGTGGTGGA TGTGATAATC 
550
AAAGCAATAG TGGCATGGAG AATCTCTTAA CAATGTCTGG CCAAATGAGT 
600
TACCATGAAG CTACTCATCA TCATTATCAA AATCATAGCT CAAATGTCAC 
650
ATCGATTTTG TGCCCATCTG ATCAAAACTC CAATTTTCAA TACCAACAAG 
700
GGGCTATAAC GGTGTTTATA AACGGAGTTC CGACAGAAGT GACGAGAGGA 
750
GGAATAGACA TGAAAGCAAC GTTTGGAGAA GATTTGGTTT TGGTGCATTC 
800
CTCAGGTGTT CCTCTTCCTA CTGATGAGTT TGGTTTTTTG ATGCATAGCT 
850
TACAACATGG TGAAGCTTAT TTCCTGGTTC CAAGACAGAC ATGA
900

>AT3G03660.2 longest ORF length:297
MDQEQTPHSP TRHSRSPPSS ASGSTSAEPV RSRWSPKPEQ ILILESIFHS 
50
GMVNPPKEET VRIRKMLEKF GAVGDANVFY WFQNRRSRSR RRQRQLQAAA 
100
AAADATTNTC DQTMMVSNSL PHHSGSDLGF GGCSTSSNYL FGGSSQVPSF 
150
FLGLSSSPSS CSSSSSTSSS ASSSSSYGGG CDNQSNSGME NLLTMSGQMS 
200
YHEATHHHYQ NHSSNVTSIL CPSDQNSNFQ YQQGAITVFI NGVPTEVTRG 
250
GIDMKATFGE DLVLVHSSGV PLPTDEFGFL MHSLQHGEAY FLVPRQT
300