fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G04030 Homeodomain-like superfamily protein (.1.2.3)

>AT3G04030.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 156, 1089
EcoRI G|AATTC 429
HindIII A|AGCTT 1042
PvuII CAG|CTG 581, 1155
SacI GAGCT|C 874
SpeI A|CTAGT 618
StyI C|C[AT][AT]GG 21


Click here to view TAIR data

>AT3G04030.1 length:1167
ATGTATTACC AAAACCAGCA CCAAGGAAAG AACATCCTCT CATCTTCAAG 
50
AATGCATATA ACTTCTGAAA GGCATCCATT CCTTAGAGGG AATAGTCCAG 
100
GTGATTCTGG ACTTATCCTA TCAACCGATG CAAAGCCACG CCTAAAATGG 
150
ACTCCAGATC TTCATGAGAG ATTCATTGAA GCAGTCAATC AACTCGGTGG 
200
AGCAGATAAA GCTACTCCTA AGACAATCAT GAAAGTCATG GGGATTCCAG 
250
GCCTTACCTT ATACCATCTC AAAAGTCATC TTCAGAAATA CAGGCTGAGC 
300
AAGAATCTCA ACGGACAAGC TAACAACAGC TTCAACAAAA TAGGTATAAT 
350
GACCATGATG GAAGAAAAGA CTCCTGATGC AGACGAAATT CAAAGCGAGA 
400
ATTTAAGCAT TGGACCACAG CCAAACAAGA ATTCACCAAT AGGTGAAGCA 
450
CTGCAAATGC AAATAGAGGT CCAAAGAAGG CTTCATGAGC AACTTGAGCT 
500
TAGGATAGAG GCTCAAGGGA AGTACCTGCA ATCGGTTTTG GAGAAAGCAC 
550
AAGAGACTCT TGGAAGACAG AACCTCGGTG CAGCTGGGAT CGAAGCTGCC 
600
AAAGTTCAAC TCTCGGAACT AGTATCTAAA GTATCAGCAG AGTACCCAAA 
650
CTCTAGTTTC CTAGAACCAA AAGAACTTCA AAACCTATGC TCACAACAGA 
700
TGCAAACAAA CTATCCACCT GATTGCTCTC TTGAAAGTTG CCTGACCTCA 
750
AGCGAGGGAA CGCAGAAAAA CTCGAAAATG CTAGAGAACA ACAGATTAGG 
800
ACTAAGAACG TATATTGGTG ATTCAACATC GGAGCAGAAA GAGATTATGG 
850
AAGAACCATT GTTCCAAAGA ATGGAGCTCA CATGGACAGA AGGTCTAAGA 
900
GGGAATCCAT ATCTTTCAAC AATGGTGAGT GAAGCAGAAC AAAGAATCTC 
950
ATATTCAGAA AGAAGTCCAG GTAGATTATC AATAGGAGTA GGATTGCACG 
1000
GACACAAAAG CCAACATCAA CAAGGCAACA ATGAGGATCA TAAGCTTGAA 
1050
ACACGAAACC GGAAAGGCAT GGATTCAACA ACAGAGCTAG ATCTCAACAC 
1100
ACATGTTGAA AACTATTGTA CAACGCGTAC GAAACAGTTC GACTTGAATG 
1150
GTTTCAGCTG GAACTGA
1200

>AT3G04030.1 longest ORF length:388
MYYQNQHQGK NILSSSRMHI TSERHPFLRG NSPGDSGLIL STDAKPRLKW 
50
TPDLHERFIE AVNQLGGADK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS 
100
KNLNGQANNS FNKIGIMTMM EEKTPDADEI QSENLSIGPQ PNKNSPIGEA 
150
LQMQIEVQRR LHEQLELRIE AQGKYLQSVL EKAQETLGRQ NLGAAGIEAA 
200
KVQLSELVSK VSAEYPNSSF LEPKELQNLC SQQMQTNYPP DCSLESCLTS 
250
SEGTQKNSKM LENNRLGLRT YIGDSTSEQK EIMEEPLFQR MELTWTEGLR 
300
GNPYLSTMVS EAEQRISYSE RSPGRLSIGV GLHGHKSQHQ QGNNEDHKLE 
350
TRNRKGMDST TELDLNTHVE NYCTTRTKQF DLNGFSWN
400