fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G04030 Homeodomain-like superfamily protein (.1.2.3)

>AT3G04030.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 156, 1104
EcoRI G|AATTC 426
HindIII A|AGCTT 1057
PvuII CAG|CTG 596, 1170
SacI GAGCT|C 889
SpeI A|CTAGT 633
StyI C|C[AT][AT]GG 21


Click here to view TAIR data

>AT3G04030.2 length:1182
ATGTATTACC AAAACCAGCA CCAAGGAAAG AACATCCTCT CATCTTCAAG 
50
AATGCATATA ACTTCTGAAA GGCATCCATT CCTTAGAGGG AATAGTCCAG 
100
GTGATTCTGG ACTTATCCTA TCAACCGATG CAAAGCCACG CCTAAAATGG 
150
ACTCCAGATC TTCATGAGAG ATTCATTGAA GCAGTCAATC AACTCGGTGG 
200
AGCAGATACT ACTCCTAAGA CAATCATGAA AGTCATGGGG ATTCCAGGCC 
250
TTACCTTATA CCATCTCAAA AGTCATCTTC AGAAATACAG GCTGAGCAAG 
300
AATCTCAACG GACAAGCTAA CAACAGCTTC AACAAAATAG GTATAATGAC 
350
CATGATGGAA GAAAAGACTC CTGATGCAGA CGAAATTCAA AGCGAGAATT 
400
TAAGCATTGG ACCACAGCCA AACAAGAATT CACCAATAGG TGAAGCACTG 
450
CAAATGCAAA TAGAGGTCCA AAGAAGGCTT CATGAGCAAC TTGAGGTACA 
500
GCGACATTTG CAGCTTAGGA TAGAGGCTCA AGGGAAGTAC CTGCAATCGG 
550
TTTTGGAGAA AGCACAAGAG ACTCTTGGAA GACAGAACCT CGGTGCAGCT 
600
GGGATCGAAG CTGCCAAAGT TCAACTCTCG GAACTAGTAT CTAAAGTATC 
650
AGCAGAGTAC CCAAACTCTA GTTTCCTAGA ACCAAAAGAA CTTCAAAACC 
700
TATGCTCACA ACAGATGCAA ACAAACTATC CACCTGATTG CTCTCTTGAA 
750
AGTTGCCTGA CCTCAAGCGA GGGAACGCAG AAAAACTCGA AAATGCTAGA 
800
GAACAACAGA TTAGGACTAA GAACGTATAT TGGTGATTCA ACATCGGAGC 
850
AGAAAGAGAT TATGGAAGAA CCATTGTTCC AAAGAATGGA GCTCACATGG 
900
ACAGAAGGTC TAAGAGGGAA TCCATATCTT TCAACAATGG TGAGTGAAGC 
950
AGAACAAAGA ATCTCATATT CAGAAAGAAG TCCAGGTAGA TTATCAATAG 
1000
GAGTAGGATT GCACGGACAC AAAAGCCAAC ATCAACAAGG CAACAATGAG 
1050
GATCATAAGC TTGAAACACG AAACCGGAAA GGCATGGATT CAACAACAGA 
1100
GCTAGATCTC AACACACATG TTGAAAACTA TTGTACAACG CGTACGAAAC 
1150
AGTTCGACTT GAATGGTTTC AGCTGGAACT GA
1200

>AT3G04030.2 longest ORF length:393
MYYQNQHQGK NILSSSRMHI TSERHPFLRG NSPGDSGLIL STDAKPRLKW 
50
TPDLHERFIE AVNQLGGADT TPKTIMKVMG IPGLTLYHLK SHLQKYRLSK 
100
NLNGQANNSF NKIGIMTMME EKTPDADEIQ SENLSIGPQP NKNSPIGEAL 
150
QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY LQSVLEKAQE TLGRQNLGAA 
200
GIEAAKVQLS ELVSKVSAEY PNSSFLEPKE LQNLCSQQMQ TNYPPDCSLE 
250
SCLTSSEGTQ KNSKMLENNR LGLRTYIGDS TSEQKEIMEE PLFQRMELTW 
300
TEGLRGNPYL STMVSEAEQR ISYSERSPGR LSIGVGLHGH KSQHQQGNNE 
350
DHKLETRNRK GMDSTTELDL NTHVENYCTT RTKQFDLNGF SWN
400