fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G04420 ANAC048 NAC domain containing protein 48 (.1.2)

>AT3G04420.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 358
StyI C|C[AT][AT]GG 139
XhoI C|TCGAG 938


Click here to view TAIR data

>AT3G04420.1 length:1029
ATGGAGAATC CGGTGGGTTT AAGATTCCGT CCGACCGACA AGGAGATCGT 
50
CGTCGATTAC CTCCGACCAA AAAACTCCGA TAGGGACACG AGTCATGTTG 
100
ATCGAGTCAT TAGCACAGTC ACTATCCGTA GCTTCGACCC TTGGGAGTTA 
150
CCTTGCCAGT CTAGGATCAA ACTGAAAGAT GAGTCTTGGT GTTTCTTCAG 
200
CCCTAAGGAG AACAAATATG GCAGAGGTGA TCAACAAATT AGAAAAACGA 
250
AATCTGGTTA CTGGAAGATT ACTGGCAAAC CAAAGCCTAT CTTGCGTAAC 
300
CGCCAAGAGA TCGGTGAGAA AAAGGTTTTG ATGTTTTACA TGAGTAAGGA 
350
ACTTGGTGGA TCCAAATCCG ACTGGGTTAT GCACGAGTAC CATGCTTTCT 
400
CTCCTACTCA GATGATGATG ACATATACAA TATGTAAAGT TATGTTTAAG 
450
GGTGACGTGA GAGAGATTTC TTCTTCTTCT GCTTCTTATG GTAGTGAAAT 
500
TGAGCAGAGT CGTGACTCTT TAATCCCTCT TCTTGTGAAC GATTCTGAGG 
550
AAGAAGCTCA AATCGAGGAT GCTATACCAA TAGAGGAATG GGAAACATGG 
600
TTGACTGATG ATGGTGTTGA TGAGCAGGTG AATCATATTA TGAATATGAA 
650
AGATGATCGC AACAACCACA GGCCTCAAAA GCCATTGACT GGTGTCTTGA 
700
TTGACGATAG TAGTGATGAT GATGATGATT CTGATTTGCT ATCTCCAACA 
750
ACAAATTCTA TTGAAAATTC GAGCACTTGT GATAGTTTTG GTAGCTCAGA 
800
CCAAATCAAC TTAGTGTCAC TAACTCAAGA GGTGAGCCAA GCTCTGATAA 
850
CCAGTATTGA TACACCCGAG AAGATTAAGA GTCCTTATGA TGATGCACAA 
900
GGGACTGGGG CTGGAGGGCA AAAATTGGGT CAAGAGACTC GAGAGAAGAA 
950
ACGAGCTGGT TTCTTTCACA GGATGATACA AATATTCGTC AAGAAAATTC 
1000
ACCAATGTTC TTCTATCTCA AGAACATAA
1050

>AT3G04420.1 longest ORF length:342
MENPVGLRFR PTDKEIVVDY LRPKNSDRDT SHVDRVISTV TIRSFDPWEL 
50
PCQSRIKLKD ESWCFFSPKE NKYGRGDQQI RKTKSGYWKI TGKPKPILRN 
100
RQEIGEKKVL MFYMSKELGG SKSDWVMHEY HAFSPTQMMM TYTICKVMFK 
150
GDVREISSSS ASYGSEIEQS RDSLIPLLVN DSEEEAQIED AIPIEEWETW 
200
LTDDGVDEQV NHIMNMKDDR NNHRPQKPLT GVLIDDSSDD DDDSDLLSPT 
250
TNSIENSSTC DSFGSSDQIN LVSLTQEVSQ ALITSIDTPE KIKSPYDDAQ 
300
GTGAGGQKLG QETREKKRAG FFHRMIQIFV KKIHQCSSIS RT
350