fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G04450 Homeodomain-like superfamily protein (.1.2)

>AT3G04450.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PvuII, SacI, SalI, SmaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 654
EcoRV GAT|ATC 946
NheI G|CTAGC 10
PstI CTGCA|G 1054, 1249
SpeI A|CTAGT 1297
StyI C|C[AT][AT]GG 467
XbaI T|CTAGA 57


Click here to view TAIR data

>AT3G04450.1 length:1329
ATGACACTTG CTAGCGATTT TGGTTTTCCA TCCGCTATAT CTTCATCTTT 
50
TACAATTCTA GAAGAGAGAT ACCACAATAA CTTTCCTAAC ACTTTGTGTG 
100
TTTCATCAGG ACAGGAATCG ATGAATAACA ACCCCGTCCC CTGTCAGGTG 
150
TTTCCTCTGG TCTCTGGTGG TAGTTCTGGT GGGAATTTGT TTTCATCTTC 
200
TTCCGGATTC TGCAATGGTG TCTATGTTTC ATCTTCCTCC CAGGCACGGC 
250
CATCTGTTTC TACCGTGCCA AGAGACAGAA TTACTGTTGC TCACGTCTCT 
300
GGTGAAGGGC AGAGGCAGGA ATGCCCTGTG GAAACACATT CCTTGCAATT 
350
GATCAATCAA CCTCAAGAAC AGAAAATTAT GACTTGGTCT TCAGACCAGA 
400
TTCGGGGCTT CTTCGATTTT CCTGTTCCAG ATCCACAAGC AGCGAGCAGC 
450
AGAACTATGG TTTCATCCAA GGAAGTGCTT TCAAAATGCG AATGGCCAGA 
500
CTGGGCGGAT CAGTTGATCT CTGATGATAG TCTTGAACCA AATTGGTCGG 
550
AGCTTCTAGG TGATCCTAAT GTACTCAATC TATATTCAAA GATAGAAACA 
600
CAGTCTTCTG ATATAGCAAG GCAAGAGATC GTCTTTAGAA ATCAGCATCA 
650
GGTGGATCCA TCAATGGAGC CGTTTAATGC CAAAAGCCCA CCAGCTAGTT 
700
CAATGACATC TAAGCAAAGA ATGCGTTGGA CACCAGAACT TCATGAAGCA 
750
TTTGTCGAAG CTATCAATCA GCTCGGTGGT AGTGAACGAG CCACCCCTAA 
800
GGCTGTTTTG AAGCTCATCA ATAGCCCTGG GTTGACCGTT TATCATGTCA 
850
AAAGCCATTT GCAGAAATAC AGAACTGCAA GGTATAAACC AGAGCTTTCC 
900
AAAGATACAG AAGAACCTCT AGTAAAGAAT TTGAAAACCA TTGAAGATAT 
950
CAAATCTCTT GACTTGAAGA CGAGCATTGA AATCACTGAA GCTCTCCGGT 
1000
TACAGATGAA AGTTCAAAAA CAACTCCACG AGCAACTTGA GATCCAAAGA 
1050
TCACTGCAGT TACAAATCGA AGAACAAGGT CGGTATCTTC AGATGATGAT 
1100
TGAGAAACAA CAGAAGATGC AAGAGAACAA AAAAGACTCT ACTTCCTCAT 
1150
CATCAATGCC AGAAGCTGAC CCTTCAGCTC CATCACCAAA CCTTTCACAA 
1200
CCTTTCCTCC ATAAAGCAAC CAATTCAGAA CCATCAATAA CTCAGAAACT 
1250
GCAGAATGGT TCTAGCACAA TGGATCAAAG TGAATCTACT TCTGGGACTA 
1300
GTAATAGAAA ACGGGTTAGA GAAGATTAG
1350

>AT3G04450.1 longest ORF length:442
MTLASDFGFP SAISSSFTIL EERYHNNFPN TLCVSSGQES MNNNPVPCQV 
50
FPLVSGGSSG GNLFSSSSGF CNGVYVSSSS QARPSVSTVP RDRITVAHVS 
100
GEGQRQECPV ETHSLQLINQ PQEQKIMTWS SDQIRGFFDF PVPDPQAASS 
150
RTMVSSKEVL SKCEWPDWAD QLISDDSLEP NWSELLGDPN VLNLYSKIET 
200
QSSDIARQEI VFRNQHQVDP SMEPFNAKSP PASSMTSKQR MRWTPELHEA 
250
FVEAINQLGG SERATPKAVL KLINSPGLTV YHVKSHLQKY RTARYKPELS 
300
KDTEEPLVKN LKTIEDIKSL DLKTSIEITE ALRLQMKVQK QLHEQLEIQR 
350
SLQLQIEEQG RYLQMMIEKQ QKMQENKKDS TSSSSMPEAD PSAPSPNLSQ 
400
PFLHKATNSE PSITQKLQNG SSTMDQSEST SGTSNRKRVR ED
450