fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G04590 AT hook motif DNA-binding family protein (.1.2)

>AT3G04590.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 3, 706
HpaI GTT|AAC 918
NdeI CA|TATG 671
PvuII CAG|CTG 812
SalI G|TCGAC 326


Click here to view TAIR data

>AT3G04590.2 length:1236
ATGGATCCTA ACGAAAGCCA CCATCACCAC CAACAACAAC AGCTCCATCA 
50
CCTCCACCAA CAGCAACAGC AACAGCAGCA GCAGCAACGA CTCACTTCTC 
100
CTTACTTCCA CCACCAACTA CAGCACCATC ACCACCTTCC AACCACCGTA 
150
GCAACCACCG CTTCTACCGG AAACGCCGTT CCATCTTCCA ACAATGGGCT 
200
TTTCCCTCCG CAGCCTCAGC CACAGCACCA GCCTAATGAT GGGTCATCTT 
250
CTCTCGCGGT GTACCCTCAT TCAGTTCCGT CCTCGGCTGT GACGGCGCCG 
300
ATGGAGCCGG TAAAGAGGAA GAGGGGTCGA CCAAGAAAGT ATGTGACGCC 
350
GGAACAAGCC CTAGCGGCTA AGAAATTGGC GTCTTCTGCG AGTAGTTCGT 
400
CTGCTAAACA GAGGCGAGAG CTTGCTGCTG TTACCGGTGG TACGGTATCG 
450
ACTAATTCCG GGTCATCCAA GAAATCTCAG CTTGGTTCTG TCGGGAAAAC 
500
TGGACAATGT TTTACTCCGC ATATTGTTAA TATAGCTCCT GGCGAGGATG 
550
TGGTCCAGAA AATTATGATG TTCGCAAACC AAAGCAAGCA TGAACTATGC 
600
GTTCTTTCTG CATCAGGCAC TATCTCTAAT GCATCCTTGC GCCAACCGGC 
650
TCCATCAGGA GGCAACTTAC CATATGAGGG TCAATACGAG ATTCTCTCAC 
700
TATCTGGATC CTATATCCGA ACTGAACAAG GTGGTAAATC CGGCGGCCTT 
750
AGCGTTTCTT TATCTGCTTC AGATGGTCAG ATCATCGGTG GAGCGATTGG 
800
TAGCCATCTC ACAGCTGCTG GCCCGGTTCA GGTGATTCTT GGTACGTTTC 
850
AGCTTGATAG AAAGAAGGAT GCCGCCGGGA GTGGTGGGAA AGGGGATGCT 
900
TCAAACAGTG GAAGTCGGTT AACTTCTCCT GTAAGCTCTG GACAGTTGCT 
950
TGGCATGGGT TTCCCTCCTG GTATGGAATC TACGGGAAGA AATCCAATGA 
1000
GGGGAAACGA CGAGCAACAT GATCATCATC ATCATCAAGC CGGTTTGGGT 
1050
GGACCTCATC ATTTCATGAT GCAAGCGCCG CAGGGGATAC ACATGACACA 
1100
TTCCAGGCCA TCTGAATGGC GCGGAGGAGG CAACAGCGGT CATGATGGCA 
1150
GAGGCGGTGG CGGGTATGAT TTGTCAGGAA GGATAGGACA TGAGTCGTCG 
1200
GAGAATGGAG ATTACGAGCA GCAAATACCG GATTAG
1250

>AT3G04590.2 longest ORF length:411
MDPNESHHHH QQQQLHHLHQ QQQQQQQQQR LTSPYFHHQL QHHHHLPTTV 
50
ATTASTGNAV PSSNNGLFPP QPQPQHQPND GSSSLAVYPH SVPSSAVTAP 
100
MEPVKRKRGR PRKYVTPEQA LAAKKLASSA SSSSAKQRRE LAAVTGGTVS 
150
TNSGSSKKSQ LGSVGKTGQC FTPHIVNIAP GEDVVQKIMM FANQSKHELC 
200
VLSASGTISN ASLRQPAPSG GNLPYEGQYE ILSLSGSYIR TEQGGKSGGL 
250
SVSLSASDGQ IIGGAIGSHL TAAGPVQVIL GTFQLDRKKD AAGSGGKGDA 
300
SNSGSRLTSP VSSGQLLGMG FPPGMESTGR NPMRGNDEQH DHHHHQAGLG 
350
GPHHFMMQAP QGIHMTHSRP SEWRGGGNSG HDGRGGGGYD LSGRIGHESS 
400
ENGDYEQQIP D
450