|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT3G05380 | ALY2, ATALY2 | ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) |
>AT3G05380.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, XbaI, XhoI
| Name | Recognition sequence | Cut positions |
| BglII | A|GATCT | 1810 |
| HindIII | A|AGCTT | 1752, 1846, 3054 |
| PstI | CTGCA|G | 1744 |
| PvuII | CAG|CTG | 3017 |
| SpeI | A|CTAGT | 1426, 2533 |
| StyI | C|C[AT][AT]GG | 385, 2412 |
Click here to view TAIR data
>AT3G05380.1 length:3156
ATGGCACCAG TTAGGAAGTC GAGGAGTGTG AACAAGCGTT TCACCAATGA | 50 |
AACTTCCCCA AGAAAAGATG CTGGGAAATC GAAAAAAAAT AAGCTACGTA | 100 |
AGAAATTGTC TGACAAGCTG GGACCTCAGT GGACCAGATT AGAACTTGAG | 150 |
CGTTTCTATG ATGCTTACCG CAAGCACGGA CAAGAGTGGA GAAGGGTGGC | 200 |
TGCTGCAATT CGGAATAGCA GGTCTGTTGA CATGGTGGAA GCTCTATTTA | 250 |
ATATGAATCG GGCGTATTTA TCTCTCCCCG AGGGAACTGC CTCTGTAGCT | 300 |
GGCCTTATTG CGATGATGAC AGATCATTAC AGTGTCATGG AAGGGAGTGG | 350 |
CAGTGAAGGA GAAGGCCATG ATGCTTCAGA AGTACCAAGG AAACAACAAA | 400 |
AGCGCAAACG TGCTAAACCT CAACGTAGCG ATTCTCCAGA GGAAGTGGAT | 450 |
ATACAACAGT CAATTGGTTC ACCAGATGGA TGCCTCACGT TTTTGAAGCA | 500 |
AGCACGAGCT AATGGAACTC AGCGACATGC CACTGGAAAA CGTACACCAC | 550 |
GGGTTCCTGT ACAAACTTCA TTTATGAGGG ATGATAGAGA AGGCTCTACT | 600 |
CCACCAAATA AAAGAGCCAG GAAGCAATTC GATGCCAATG ATGATGTAGC | 650 |
ACATTTTTTA GCGTTAGCAT TAACAGATGC ATCGAGAAGG GGAGGGTCTC | 700 |
CAAAAGTTTC TGAATCACCA AATAGAAGAA CAGAACTTAG CGATAGCTCA | 750 |
CCGATAAAGA GCTGGGGGAA AATGTCGCGA ACCAGAAAAT CTCAGTCTAA | 800 |
GCACTGTGGC AGCTCCATTT TCGAGGAGTG GATGGAAAGT AGCCGAGAAA | 850 |
GGAAACTTGA CTCTGATAAA GATACTACCT TGTTGATGGA TATGGAAAGG | 900 |
GCTGGCGAAA TGGAGGCTCC GCGGAAGGGG AAAAGAGTCT ACAAGAAAAG | 950 |
AGTGAAAGTC GAAGAAGCAG AATGTAATGA TTCTGATGAC AATGGAGAAG | 1000 |
CATGCAGTGC CACACAAGGG CTCAGAAGTA AATCACAAAG ACGAAAGGCT | 1050 |
GCTATTGAAG CCTCAAGAGA GAAATACTCA CCGCGCAGCC CAAAGAAAAG | 1100 |
AGATGACAAA CATACTTCCG GAGCTTTTGA TGCCCTGCAA GCATTGGCCG | 1150 |
AATTGTCAGC TTCAATGCTT CCAGCAAATT TGATGGAGTC AGAATTATCT | 1200 |
GCTCAGTTGA AGGAAGAAAG AACAGAATAC GACATGGACG AGAAATCTAG | 1250 |
CACACCAGAA GCTACTTCCA CAAGCAGTCA TGGGGAAAAA GCAAATGTAG | 1300 |
AGCCAGATGA TAGTCTCCTT CATGCAATTT CTTCTGTTGA GAATGCTAAC | 1350 |
AAGAGAAAGT CAAAACCTTC AAGGCTGGTA TCCACTGATT GTGATGATGT | 1400 |
TCCCACAGGG AAGCTACAAC CACAAACTAG TGGCAGTTTA AGAAAACGTA | 1450 |
AACCAAAGGT ACTAGGGGAT GAAGCTCCAG CAGAGTTTAG TCAGAACAAA | 1500 |
TCCATAAACA AGAAGGAATT GCCTCAAGAT GAGAATAATA TGAAGTCTTT | 1550 |
GGTTAAAACA AAACGCGCTG GTCAAGTTCC GGCTCAGTCA AAACAGATGA | 1600 |
AAACTGTTAA GGCGTTGGAG GAATCTGCTA TAACAAGTGA TAAGAAAAGA | 1650 |
CCTGGGATGG ATATAGTAGC GTCACCTAAA CAAGTTTCTG ACTCGGGTCC | 1700 |
AACCAGTTTA TCGCAGAAAC CTCCAAACAG GCGAAAGAAG AGTCTGCAGA | 1750 |
AAAGCTTACA AGAAAAGGCT AAATCTTCTG AAACCACTCA TAAAGCTGCA | 1800 |
CGTAGTTCCA GATCTCTTTC AGAACAAGAG TTGTTGTTAA AGGATAAGCT | 1850 |
TGCTACTTCT CTGTCGTTTC CCTTTGCACG TCGAAGGTGC ATATTTGAAT | 1900 |
GGTTTTATAG TGCTATCGAC CATCCCTGGT TTTCAAAGAT GGAGTTTGTC | 1950 |
GATTACCTAA ATCACGTGGG GCTTGGTCAC ATTCCAAGAC TTACTCGTCT | 2000 |
TGAATGGAGC GTCATTAAAA GTTCTCTTGG TAGACCACGA AGATTCTCTG | 2050 |
AGAGATTTTT ACATGAAGAG CGGGAGAAAC TTAAACAGTA CCGCGAATCT | 2100 |
GTGCGAAAGC ATTATACAGA GCTTCGAACG GGTGCTAGGG AGGGGCTTCC | 2150 |
TACAGATTTG GCTCGGCCAT TAGCAGTTGG GAACAGAGTC ATTGCCATCC | 2200 |
ATCCCAAAAC ACGGGAGATT CATGATGGAA AAATTCTCAC TGTTGATCAT | 2250 |
AACAAATGCA ATGTTCTCTT CGATGACTTG GGCGTTGAGT TGGTTATGGA | 2300 |
CATTGATTGC ATGCCTTTAA ATCCACTGGA ATACATGCCA GAGGGTCTAA | 2350 |
GGAGGCAAAT TGATAAGTGC TTGTCTATGA AGAAAGAAGC ACAGCTAAGC | 2400 |
GGGAATACAA ACCTTGGTGT GTCTGTGCTA TTCCCTCCTT GCGGACTTGA | 2450 |
AAATGTCAGC TTTTCCATGA ATCCTCCTCT GAATCAGGGT GATATGATTG | 2500 |
CTCCCATTCT GCATGGTAAA GTATCAAGCA ACACTAGTAG TCCACGGCAG | 2550 |
ACTAATCATT CATATATCAC AACTTATAAC AAAGCAAAAG AAGCTGAGAT | 2600 |
TCAACGGGCA CAAGCGCTAC AGCATGCTTT AGATGAAAAG GAAATGGAGC | 2650 |
CAGAGATGCT AGAAATTGTC AAGGGTTCAA AAACAAGAGC GCAAGCAATG | 2700 |
GTGGATGCAG CTATAAAGGC TGCATCATCT GTGAAGGAAG GGGAAGATGT | 2750 |
GAACACAATG ATCCAAGAAG CCTTAGAGTT GGTTGGCAAA AATCAGCTAT | 2800 |
TACGCAGCTC TATGGTCAAA CATCACGAGC ATGTAAATGG CAGTATAGAG | 2850 |
CATCATCACA ACCCATCTCC TTCAAATGGA TCAGAGCCTG TGGCTAACAA | 2900 |
CGATTTAAAC TCACAAGATG GTTCAGAGAA AAACGCTCAA ATGCCTTCAG | 2950 |
AGCTTATCAC CTCCTGTGTT GCCACTTGGC TCATGATTCA GATGTGCACG | 3000 |
GAGAGACAGT ACCCTCCAGC TGATGTCGCA CAGCTTATAG ACGCAGCAGT | 3050 |
CACAAGCTTG CAGCCACGAT GCCCACAGAA CCTACCGATC TACAGAGAAA | 3100 |
TCCAAACGTG CATGGGACGG ATCAAGACTC AAATCATGTC CCTTGTACCA | 3150 |
ACTTGA | 3200 |
>AT3G05380.1 longest ORF length:1051
MAPVRKSRSV NKRFTNETSP RKDAGKSKKN KLRKKLSDKL GPQWTRLELE | 50 |
RFYDAYRKHG QEWRRVAAAI RNSRSVDMVE ALFNMNRAYL SLPEGTASVA | 100 |
GLIAMMTDHY SVMEGSGSEG EGHDASEVPR KQQKRKRAKP QRSDSPEEVD | 150 |
IQQSIGSPDG CLTFLKQARA NGTQRHATGK RTPRVPVQTS FMRDDREGST | 200 |
PPNKRARKQF DANDDVAHFL ALALTDASRR GGSPKVSESP NRRTELSDSS | 250 |
PIKSWGKMSR TRKSQSKHCG SSIFEEWMES SRERKLDSDK DTTLLMDMER | 300 |
AGEMEAPRKG KRVYKKRVKV EEAECNDSDD NGEACSATQG LRSKSQRRKA | 350 |
AIEASREKYS PRSPKKRDDK HTSGAFDALQ ALAELSASML PANLMESELS | 400 |
AQLKEERTEY DMDEKSSTPE ATSTSSHGEK ANVEPDDSLL HAISSVENAN | 450 |
KRKSKPSRLV STDCDDVPTG KLQPQTSGSL RKRKPKVLGD EAPAEFSQNK | 500 |
SINKKELPQD ENNMKSLVKT KRAGQVPAQS KQMKTVKALE ESAITSDKKR | 550 |
PGMDIVASPK QVSDSGPTSL SQKPPNRRKK SLQKSLQEKA KSSETTHKAA | 600 |
RSSRSLSEQE LLLKDKLATS LSFPFARRRC IFEWFYSAID HPWFSKMEFV | 650 |
DYLNHVGLGH IPRLTRLEWS VIKSSLGRPR RFSERFLHEE REKLKQYRES | 700 |
VRKHYTELRT GAREGLPTDL ARPLAVGNRV IAIHPKTREI HDGKILTVDH | 750 |
NKCNVLFDDL GVELVMDIDC MPLNPLEYMP EGLRRQIDKC LSMKKEAQLS | 800 |
GNTNLGVSVL FPPCGLENVS FSMNPPLNQG DMIAPILHGK VSSNTSSPRQ | 850 |
TNHSYITTYN KAKEAEIQRA QALQHALDEK EMEPEMLEIV KGSKTRAQAM | 900 |
VDAAIKAASS VKEGEDVNTM IQEALELVGK NQLLRSSMVK HHEHVNGSIE | 950 |
HHHNPSPSNG SEPVANNDLN SQDGSEKNAQ MPSELITSCV ATWLMIQMCT | 1000 |
ERQYPPADVA QLIDAAVTSL QPRCPQNLPI YREIQTCMGR IKTQIMSLVP | 1050 |
T | 1100 |