|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT3G06380 | ATTLP9 | tubby-like protein 9 (.1) |
>AT3G06380.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, BtrI, BtsI, ClaI, DraI, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, HaeII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, MslI, , NarI, NdeI, NheI, NotI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PstI, PvuI, RsaI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 171, 425, 487, 732 |
| AciI | C|CGC | 57, 69, 580 |
| AflIII | A|CPuPyGT | 488, 1049 |
| AluI | AG|CT | 92, 102, 114, 209, 238, 417, 745, 761, 886, 969 |
| ApoI | Pu|AATTPy | 250, 529, 927 |
| AvaI | C|PyCGPuG | 674 |
| AvaII | G|G[AT]CC | 294, 678 |
| BanII | GPuGCPy|C | 103 |
| BfaI | C|TAG | 33, 308, 609 |
| BglI | GCCNNNN|NGGC | 173 |
| BlpI | GC|TNAGC | 877 |
| BsaJI | C|CNNGG | 227, 519, 855, 892, 933, 1058 |
| BsaWI | [AT]|CCGG[AT] | 556 |
| BsiHKAI | G[AT]GC[AT]|C | 103 |
| BslI | CCNNNNN|NNGG | 137 |
| BsmI | GAATGCN| | 690 |
| BsoBI | C|PyCGPuG | 674 |
| Bsp1286I | G[GAT]GC[CAT]|C | 103 |
| BsrFI | Pu|CCGGPy | 196 |
| BssHII | G|CGCGC | 426 |
| BssKI | |CCNGG | 20, 107, 854 |
| BstNI | CC|[AT]GG | 20, 854 |
| BstUI | CG|CG | 171, 425, 487, 732 |
| BstYI | Pu|GATCPy | 861 |
| Bsu36I | CC|TNAGG | 620 |
| BtgI | C|CPuPyGG | 892, 933, 1058 |
| Cac8I | GCN|NGC | 196, 426 |
| Cfr10I | [AG]|CCGG[TC] | 196 |
| DdeI | C|TNAG | 120, 415, 619, 665, 842, 876, 1009, 1107 |
| DpnI | GA-CH3|TC | 507, 860, 1015 |
| DpnII | |GATC | 507, 860, 1015 |
| DraIII | CACNNN|GTG | 44 |
| EaeI | Py|GGCCPu | 166 |
| EcoRI | G|AATTC | 250 |
| EcoRV | GAT|ATC | 469, 1070 |
| Fnu4HI | GC|NGC | 57, 116, 157, 173, 408, 561, 580 |
| FspI | TGC|GCA | 815 |
| HaeIII | GG|CC | 36, 165 |
| HhaI | GCG|C | 424, 814 |
| HinP1I | G|CGC | 424, 814 |
| HincII | GTPy|PuAC | 151 |
| HinfI | G|ANTC | 218, 303, 729, 840, 940 |
| HpaII | C|CGG | 107, 195, 555 |
| Hpy188I | TCN|GA | 7, 81, 99, 364, 462, 551, 1008, 1073 |
| Hpy99I | CG[AT]CG| | 169 |
| HpyCH4III | ACN|GT | 43, 147, 534, 893, 945, 988 |
| HpyCH4IV | A|CGT | 2, 180, 328, 660, 910 |
| HpyCH4V | TG|CA | 434, 570, 695, 826 |
| MboI | |GATC | 507, 860, 1015 |
| MluI | A|CGCGT | 488 |
| MseI | T|TAA | 368, 656, 923, 957 |
| MspA1I | C[AC]G|C[GT]G | 93 |
| MspI | C|CGG | 107, 195, 555 |
| MwoI | GCNNNNN|NNGC | 35, 69, 173, 433, 844, 1089 |
| N.BstNBI | GAGTCNNNN|N | 734, 945 |
| NaeI | GCC|GGC | 196 |
| NciI | CC|[CG]GG | 107 |
| NcoI | C|CATGG | 933, 1058 |
| NgoMIV | G|CCGGC | 196 |
| NlaIII | CATG| | 700, 831, 899, 932, 1048, 1057 |
| NlaIV | GGN|NCC | 678 |
| NruI | TCG|CGA | 733 |
| NspI | PuCATG|Py | 1049 |
| PciI | A|CATGT | 1049 |
| PsiI | TTA|TAA | 323 |
| PspGI | |CC[AT]GG | 20, 854 |
| PvuII | CAG|CTG | 93 |
| SacI | GAGCT|C | 103 |
| Sau3AI | |GATC | 507, 860, 1015 |
| Sau96I | G|GNCC | 294, 678 |
| ScrFI | CC|NGG | 20, 107, 854 |
| SmlI | C|TPyPuAG | 283 |
| StyI | C|C[AT][AT]GG | 227, 519, 933, 1058 |
| Taqƒ¿I | T|CGA | 334, 509, 937 |
| TfiI | G|A[AT]TC | 218, 303 |
| TseI | G|C[AT]GC | 116, 408, 561 |
| Tsp45I | |GT[CG]AC | 942, 985 |
| Tsp509I | |AATT | 249, 261, 528, 590, 926, 1126 |
| TspRI | NNCA[CG]TGNN| | 439, 948 |
Click here to view TAIR data
>AT3G06380.1 length:1143
ATGACGTTCC GAAGTTTACT CCAGGAAATG CGGTCTAGGC CACACCGTGT | 50 |
AGTTCACGCC GCCGCCTCAA CCGCTAATAG TTCAGACCCT TTCAGCTGGT | 100 |
CGGAGCTCCC GGAGGAGCTG CTTAGAGAAA TCCTGATTAG GGTTGAGACT | 150 |
GTTGACGGCG GCGATTGGCC GTCGCGGCGA AACGTGGTGG CTTGTGCCGG | 200 |
CGTTTGTCGT AGCTGGAGGA TTCTCACCAA GGAGATTGTA GCTGTTCCTG | 250 |
AATTCTCCTC TAAATTGACT TTCCCTATCT CCCTCAAGCA GTCTGGTCCA | 300 |
AGAGATTCTC TAGTTCAATG CTTTATAAAA CGTAATCGAA ATACTCAATC | 350 |
GTATCATCTC TATCTCGGAT TAACTACCTC TTTGACGGAT AACGGGAAGT | 400 |
TTCTTCTTGC TGCTTCTAAG CTGAAGCGCG CAACTTGCAC TGATTACATC | 450 |
ATCTCTTTGC GTTCAGACGA TATCTCAAAG AGAAGCAACG CGTATCTTGG | 500 |
GAGAATGAGA TCGAACTTCC TTGGAACAAA ATTCACGGTC TTTGATGGTA | 550 |
GTCAGACCGG AGCAGCGAAG ATGCAGAAGA GCCGCTCTTC TAATTTCATC | 600 |
AAAGTTTCAC CTAGAGTTCC TCAGGGAAGT TACCCCATCG CTCACATTTC | 650 |
ATACGAGTTA AACGTCTTAG GCTCTCGGGG ACCGAGAAGA ATGCGTTGCA | 700 |
TCATGGATAC AATACCTATG AGCATCGTGG AGTCGCGAGG AGTAGTAGCT | 750 |
TCAACATCCA TAAGCTCTTT TTCCAGTCGG TCATCACCAG TCTTTAGGTC | 800 |
TCACTCAAAA CCATTGCGCA GTAATAGTGC ATCATGTAGC GACTCAGGCA | 850 |
ACAACCTGGG AGATCCACCA TTGGTGCTGA GCAACAAAGC TCCACGGTGG | 900 |
CATGAGCAGT TACGTTGCTG GTGCTTAAAT TTCCATGGTC GAGTCACAGT | 950 |
GGCTTCGGTT AAGAACTTTC AGCTTGTGGC AGTTAGTGAC TGTGAAGCAG | 1000 |
GGCAGACATC TGAGAGGATC ATACTCCAGT TTGGGAAAGT TGGGAAGGAC | 1050 |
ATGTTTACCA TGGATTATGG ATATCCGATT TCTGCGTTTC AAGCGTTTGC | 1100 |
TATCTGCCTG AGCAGTTTTG AAACCAGAAT TGCCTGTGAA TAA | 1150 |
>AT3G06380.1 longest ORF length:380
MTFRSLLQEM RSRPHRVVHA AASTANSSDP FSWSELPEEL LREILIRVET | 50 |
VDGGDWPSRR NVVACAGVCR SWRILTKEIV AVPEFSSKLT FPISLKQSGP | 100 |
RDSLVQCFIK RNRNTQSYHL YLGLTTSLTD NGKFLLAASK LKRATCTDYI | 150 |
ISLRSDDISK RSNAYLGRMR SNFLGTKFTV FDGSQTGAAK MQKSRSSNFI | 200 |
KVSPRVPQGS YPIAHISYEL NVLGSRGPRR MRCIMDTIPM SIVESRGVVA | 250 |
STSISSFSSR SSPVFRSHSK PLRSNSASCS DSGNNLGDPP LVLSNKAPRW | 300 |
HEQLRCWCLN FHGRVTVASV KNFQLVAVSD CEAGQTSERI ILQFGKVGKD | 350 |
MFTMDYGYPI SAFQAFAICL SSFETRIACE | 400 |