fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G06380 ATTLP9 tubby-like protein 9 (.1)

>AT3G06380.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 250
EcoRV GAT|ATC 469, 1070
NcoI C|CATGG 933, 1058
PvuII CAG|CTG 93
SacI GAGCT|C 103
StyI C|C[AT][AT]GG 227, 519, 933, 1058


Click here to view TAIR data

>AT3G06380.1 length:1143
ATGACGTTCC GAAGTTTACT CCAGGAAATG CGGTCTAGGC CACACCGTGT 
50
AGTTCACGCC GCCGCCTCAA CCGCTAATAG TTCAGACCCT TTCAGCTGGT 
100
CGGAGCTCCC GGAGGAGCTG CTTAGAGAAA TCCTGATTAG GGTTGAGACT 
150
GTTGACGGCG GCGATTGGCC GTCGCGGCGA AACGTGGTGG CTTGTGCCGG 
200
CGTTTGTCGT AGCTGGAGGA TTCTCACCAA GGAGATTGTA GCTGTTCCTG 
250
AATTCTCCTC TAAATTGACT TTCCCTATCT CCCTCAAGCA GTCTGGTCCA 
300
AGAGATTCTC TAGTTCAATG CTTTATAAAA CGTAATCGAA ATACTCAATC 
350
GTATCATCTC TATCTCGGAT TAACTACCTC TTTGACGGAT AACGGGAAGT 
400
TTCTTCTTGC TGCTTCTAAG CTGAAGCGCG CAACTTGCAC TGATTACATC 
450
ATCTCTTTGC GTTCAGACGA TATCTCAAAG AGAAGCAACG CGTATCTTGG 
500
GAGAATGAGA TCGAACTTCC TTGGAACAAA ATTCACGGTC TTTGATGGTA 
550
GTCAGACCGG AGCAGCGAAG ATGCAGAAGA GCCGCTCTTC TAATTTCATC 
600
AAAGTTTCAC CTAGAGTTCC TCAGGGAAGT TACCCCATCG CTCACATTTC 
650
ATACGAGTTA AACGTCTTAG GCTCTCGGGG ACCGAGAAGA ATGCGTTGCA 
700
TCATGGATAC AATACCTATG AGCATCGTGG AGTCGCGAGG AGTAGTAGCT 
750
TCAACATCCA TAAGCTCTTT TTCCAGTCGG TCATCACCAG TCTTTAGGTC 
800
TCACTCAAAA CCATTGCGCA GTAATAGTGC ATCATGTAGC GACTCAGGCA 
850
ACAACCTGGG AGATCCACCA TTGGTGCTGA GCAACAAAGC TCCACGGTGG 
900
CATGAGCAGT TACGTTGCTG GTGCTTAAAT TTCCATGGTC GAGTCACAGT 
950
GGCTTCGGTT AAGAACTTTC AGCTTGTGGC AGTTAGTGAC TGTGAAGCAG 
1000
GGCAGACATC TGAGAGGATC ATACTCCAGT TTGGGAAAGT TGGGAAGGAC 
1050
ATGTTTACCA TGGATTATGG ATATCCGATT TCTGCGTTTC AAGCGTTTGC 
1100
TATCTGCCTG AGCAGTTTTG AAACCAGAAT TGCCTGTGAA TAA
1150

>AT3G06380.1 longest ORF length:380
MTFRSLLQEM RSRPHRVVHA AASTANSSDP FSWSELPEEL LREILIRVET 
50
VDGGDWPSRR NVVACAGVCR SWRILTKEIV AVPEFSSKLT FPISLKQSGP 
100
RDSLVQCFIK RNRNTQSYHL YLGLTTSLTD NGKFLLAASK LKRATCTDYI 
150
ISLRSDDISK RSNAYLGRMR SNFLGTKFTV FDGSQTGAAK MQKSRSSNFI 
200
KVSPRVPQGS YPIAHISYEL NVLGSRGPRR MRCIMDTIPM SIVESRGVVA 
250
STSISSFSSR SSPVFRSHSK PLRSNSASCS DSGNNLGDPP LVLSNKAPRW 
300
HEQLRCWCLN FHGRVTVASV KNFQLVAVSD CEAGQTSERI ILQFGKVGKD 
350
MFTMDYGYPI SAFQAFAICL SSFETRIACE 
400