fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G07220 SMAD/FHA domain-containing protein (.1)

>AT3G07220.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
EcoRI G|AATTC 108, 931
HindIII A|AGCTT 49
NcoI C|CATGG 847
PvuII CAG|CTG 655
SalI G|TCGAC 127
StyI C|C[AT][AT]GG 228, 379, 847
XhoI C|TCGAG 220


Click here to view TAIR data

>AT3G07220.1 length:963
ATGGCTACGG CTGTTGGTGG CGGAAGCGAT GTGGAGGTTG GATTTGCGAA 
50
GCTTCAAGGT GAGGATTTCG AGTACTATAT GCAGTCTTAC TCCATTATAC 
100
TCGGCCGGAA TTCTAAGAAA GCCACCGTCG ACGTTGATCT CTCATCCCTC 
150
GGCGGTGGGA TGAACATCTC GCGCAACCAC GCTCGGATCT TCTATGACTT 
200
CACTAGACGA CGCTTCTCTC TCGAGGTCCT TGGCAAAAAT GGCTGCCTCG 
250
TTGAAGGTGT TCTTCATCTC CCTGGGAATC CTAACGTCAA GCTCGATTCA 
300
CAAGACCTTT TGCAGATCGG AGACAAAGAG TTCTACTTTC TCCTACCGGT 
350
TCGGAGCATC TTAGGCGGGC CGTTGGGACC TAGGCACCAC GTCTCTGGGC 
400
AAACAAGTGT TGTTCCATAC CATAATTATC AGTCGGGTCC AGGTTCTGGG 
450
TCGGGTAAGA AGGGCGTCAG GAGTAGAGAG TTGTATGAGT ACGATGATGA 
500
AGATGATGAT GACGACGACG ATGAGGAGGA CGATATGAGA GGAAGTGGAA 
550
AGAAAACAAG GAGAGATGGA CATGAAGTAG TATATGCTTC CGGAGAGAAG 
600
AAGAGAGAGG GAAGATCAAA GGTAGATCGT GAAGCTGATG ATCAACAATT 
650
TTTGCAGCTG GAGGAAAAAG ATGTTGTATC GTCTGTTGCC ACTGTGCTTT 
700
CCGATTTGTG TGGTCCGGGA GAGTGGATGC CTATGGAAAA ACTTCATTCG 
750
GTGATATTAA AGGAGTATGG AAACGTATGG CATCACAGTC GAGTAAGAAG 
800
ATACCTATCA CAAGAAGACT GGGCTATCCC TGAAGCAAAA GGTAAACCAT 
850
GGTACGGTTT GCTGATGCTG CTGAGAAAAT ACCCGGAGCA TTTCGTCATC 
900
AACACGAGAT CAAAGGGAAG AGTTACCCTT GAATTCGTTT CCCTCGTTAC 
950
CCTACTCTCA TGA
1000

>AT3G07220.1 longest ORF length:320
MATAVGGGSD VEVGFAKLQG EDFEYYMQSY SIILGRNSKK ATVDVDLSSL 
50
GGGMNISRNH ARIFYDFTRR RFSLEVLGKN GCLVEGVLHL PGNPNVKLDS 
100
QDLLQIGDKE FYFLLPVRSI LGGPLGPRHH VSGQTSVVPY HNYQSGPGSG 
150
SGKKGVRSRE LYEYDDEDDD DDDDEEDDMR GSGKKTRRDG HEVVYASGEK 
200
KREGRSKVDR EADDQQFLQL EEKDVVSSVA TVLSDLCGPG EWMPMEKLHS 
250
VILKEYGNVW HHSRVRRYLS QEDWAIPEAK GKPWYGLLML LRKYPEHFVI 
300
NTRSKGRVTL EFVSLVTLLS 
350