fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G07650 COL9 CONSTANS-like 9 (.1.2.3.4)

>AT3G07650.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRV, HpaI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 469
BglII A|GATCT 34
EcoRI G|AATTC 705
HindIII A|AGCTT 1076
KpnI GGTAC|C 616
NcoI C|CATGG 889
StyI C|C[AT][AT]GG 564, 889


Click here to view TAIR data

>AT3G07650.2 length:1119
ATGGGTTACA TGTGTGACTT CTGTGGTGAA CAAAGATCTA TGGTGTACTG 
50
TCGATCCGAT GCAGCTTGTT TGTGTCTCTC CTGTGACCGG AGTGTTCATT 
100
CCGCTAATGC ATTGTCCAAA CGACATTCTC GGACACTTGT CTGCGAGAGA 
150
TGCAATGCTC AGCCTGCTAC TGTCAGGTGT GTTGAAGAAA GGGTTTCACT 
200
CTGTCAAAAC TGTGACTGGT CTGGCCACAA CAACAGCAAC AACAACAATT 
250
CTTCGTCTTC TTCTACTTCG CCGCAGCAGC ATAAGAGGCA AACCATAAGT 
300
TGCTATTCGG GTTGCCCTTC CAGCTCAGAA CTCGCTTCCA TTTGGTCTTT 
350
CTGTTTGGAC TTAGCTGGAC AATCTATTTG TGAACAAGAA CTGGGTATGA 
400
TGAATATAGA CGATGATGGT CCTACCGACA AGAAAACTTG TAATGAGGAT 
450
AAGAAAGATG TCTTGGTTGG ATCCTCTTCA ATTCCTGAAA CCAGTTCTGT 
500
ACCACAAGGA AAATCATCTT CTGCTAAGGA TGTTGGAATG TGTGAAGATG 
550
ACTTCTACGG GAACCTTGGT ATGGATGAAG TTGACATGGC ACTTGAGAAC 
600
TATGAAGAAC TCTTTGGTAC CGCCTTTAAC CCCTCTGAAG AGCTATTCGG 
650
GCATGGTGGA ATCGATAGCC TTTTCCATAA GCACCAAACA GCTCCAGAGG 
700
GAGGGAATTC GGTGCAGCCA GCAGGCAGTA ATGATTCGTT CATGAGTTCG 
750
AAAACTGAGC CAATAATTTG CTTCGCATCG AAGCCAGCAC ATTCGAACAT 
800
ATCCTTCTCT GGAGTCACTG GAGAAAGTAG TGCTGGAGAT TTCCAAGAAT 
850
GTGGTGCATC ATCTTCCATA CAGCTCTCGG GGGAGCCACC ATGGTATCCT 
900
CCAACATTAC AGGATAACAA TGCCTGCTCA CATTCAGTAA CCCGTAATAA 
950
CGCAGTTATG CGTTACAAGG AGAAGAAGAA GGCTCGCAAG TTTGATAAGA 
1000
GAGTGAGGTA TGCTTCCCGC AAAGCAAGAG CTGATGTGAG ACGGCGTGTA 
1050
AAGGGGCGAT TTGTCAAAGC TGGTGAAGCT TATGATTACG ACCCTCTCAC 
1100
CCCAACCAGA AGTTATTGA
1150

>AT3G07650.2 longest ORF length:372
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER 
50
CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS 
100
CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED 
150
KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN 
200
YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS 
250
KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP 
300
PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV 
350
KGRFVKAGEA YDYDPLTPTR SY
400