|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT3G08505 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) |
>AT3G08505.2 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, XbaI
| Name | Recognition sequence | Cut positions |
| BamHI | G|GATCC | 84 |
| NcoI | C|CATGG | 33 |
| NdeI | CA|TATG | 367 |
| PstI | CTGCA|G | 329, 958 |
| PvuII | CAG|CTG | 332 |
| StyI | C|C[AT][AT]GG | 33, 948 |
| XhoI | C|TCGAG | 347 |
Click here to view TAIR data
>AT3G08505.2 length:972
ATGTCCGATA GGATACTGTG CAAGTTCTTT GTCCATGGCT CGTGCTTGAA | 50 |
AGGCGAAAAT TGCGAATTTT CCCATGACTC TAAGGATCCG CCCAATAATG | 100 |
TTTGCACATT CTATCAGAAA CGAATATGTT TGTACGGAAG TAGATGTAGA | 150 |
TACGATCATG TCAGAGCTGC TTCCAATCTT CCTCTTAGCT CAGATTCTGA | 200 |
GTCTTTAGAT CGCTCTATAT CCACCACCCC CTCTAGGCAT TTGCAACAAC | 250 |
AAGGCGATAA TAATGACGGT GACAAATCCT CTAACGTTTA CTGTATCCAC | 300 |
CCTAGAGAGT ACCCGATCTG CTCTTTTGCT GCAGCTGGTG ATTGCCCTCG | 350 |
AGGTAACCAG TGTCCACATA TGCATGGTGA CCTCTGCAAT ACTTGTGGCA | 400 |
AGAAGTGTTT GCATCCTTTT AGACCCGAGG AACGAGAAGA GCATACGAAA | 450 |
GAATGTGAGA AGAAGCAGAA GCACATTGAG GCTTTGAAAC AAAGTCAAGA | 500 |
TATTGAGTGT AGTGTGTGTT TGGATCGTAT CTTGTCAAAG GCTACTCCAG | 550 |
GGGAAAGGAA GTTTGGGCTG TTGACTGAGT GTGATCATCC GTTTTGTATA | 600 |
CAATGTATTC GTAATTGGCG TAGCAGTGCT CCTGTTTCGG GAATGGATGT | 650 |
CAACAGTACG TTGAGAGCTT GTCCTATATG TCGCAAACTC TCTTATTTTG | 700 |
TTGTCCCTAG TGTGGTCTGG TACTCTTCTC CTGAGGAGAA GAAGGAAATT | 750 |
ATCGACATAT ACAAGGCTAA ACTCAGATCA ATCGACTGTA AGCACTTCAA | 800 |
CTTTGGAAAT GGAAACTGCC CATTTGGAGC AAGTTGTTTC TATAAGCATG | 850 |
CATATTCTGA TGGTCACTTG GAAGAGGTTG TTTTACGGCA TCTTGGTTCT | 900 |
CAAGAAGGAG AAACTGTAAT AACAGACAGT ATCAGGCTAT CAGAGTTCCT | 950 |
TGGTGGCCTG CAGATTTTCT AA | 1000 |
>AT3G08505.2 longest ORF length:323
MSDRILCKFF VHGSCLKGEN CEFSHDSKDP PNNVCTFYQK RICLYGSRCR | 50 |
YDHVRAASNL PLSSDSESLD RSISTTPSRH LQQQGDNNDG DKSSNVYCIH | 100 |
PREYPICSFA AAGDCPRGNQ CPHMHGDLCN TCGKKCLHPF RPEEREEHTK | 150 |
ECEKKQKHIE ALKQSQDIEC SVCLDRILSK ATPGERKFGL LTECDHPFCI | 200 |
QCIRNWRSSA PVSGMDVNST LRACPICRKL SYFVVPSVVW YSSPEEKKEI | 250 |
IDIYKAKLRS IDCKHFNFGN GNCPFGASCF YKHAYSDGHL EEVVLRHLGS | 300 |
QEGETVITDS IRLSEFLGGL QIF | 350 |