fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G09600 LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)

>AT3G09600.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 723
HpaI GTT|AAC 772
NdeI CA|TATG 821
SacI GAGCT|C 3, 841


Click here to view TAIR data

>AT3G09600.1 length:897
ATGAGCTCGT CGCCGTCAAG AAATCCAACG AACGCCGAAG CACCTCCGCC 
50
ACCACCAACA TCGACGGATG CTGTGGCAGA GGGTTCGTCT AAGAAAGTGA 
100
GGAAACCATA TACCATCACC AAGTCAAGAG AGAGCTGGAC AGAGGAAGAG 
150
CACGATAAGT TTCTTGAAGC ACTTCAACTG TTTGATCGTG ACTGGAAGAA 
200
GATTGAAGAT TTTGTTGGTT CAAAGACTGT GATTCAGATA AGGAGTCATG 
250
CTCAAAAATA CTTTCTCAAG GTTCAGAAAA ACGGGACATT AGCTCATGTG 
300
CCACCTCCTC GACCTAAGCG CAAAGCAGCT CATCCGTATC CTCAAAAGGC 
350
ATCAAAGAAC GCTCAAATGC CACTTCAAGT TTCCACGTCT TTTACTACTA 
400
CGCGAAATGG CGACATGCCG GGATATGCTT CATGGGATGA TGCCTCAATG 
450
CTGCTAAACA GAGTTATTTC ACCACAACAT GAACTTGCTA CTCTTCGTGG 
500
AGCAGAAGCT GATATTGGAT CAAAGGGCTT ATTAAATGTT AGTAGCCCTT 
550
CTACATCTGG CATGGGAAGC TCAAGCCGAA CAGTATCAGG TTCTGAGATT 
600
GTAAGAAAGG CTAAACAGCC TCCAGTGCTT CACGGTGTTC CTGATTTTGC 
650
TGAAGTTTAT AATTTCATTG GGAGTGTCTT TGATCCTGAA ACGAGAGGCC 
700
ATGTGGAAAA GCTCAAGGAA ATGGATCCTA TAAATTTCGA AACTGTTCTG 
750
TTATTGATGA GAAACCTCAC AGTTAACTTA TCAAACCCTG ATTTAGAATC 
800
CACTAGGAAA GTCCTCTTAT CATATGACAA CGTGACGACC GAGCTCCCAA 
850
GCGTTGTTTC CCTTGTCAAG AACTCAACAA GCGACAAATC AGCATAA
900

>AT3G09600.1 longest ORF length:298
MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE 
50
HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV 
100
PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM 
150
LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI 
200
VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL 
250
LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA
300