fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G10580 Homeodomain-like superfamily protein (.1.2)

>AT3G10580.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 706
EcoRI G|AATTC 516, 717
HindIII A|AGCTT 837
PstI CTGCA|G 115
SmaI CCC|GGG 683
StyI C|C[AT][AT]GG 155, 286


Click here to view TAIR data

>AT3G10580.1 length:864
ATGGATGCAG CAATTCCGAT TTGGAAGAGG GACGATGATA AGCGTTTTGA 
50
GTTAGCTCTG GTTCGATTCC CTGCTGAGGG TTCGCCGGAT TTTTTAGAGA 
100
ATATCGCTCA GTTTCTGCAG AAACCGTTAA AGGAGGTGTA CTCCTACTAC 
150
CAAGCCTTGG TCGATGATGT TACGCTGATC GAATCGGGTA AGTATCCTTT 
200
GCCCAAGTAC CCGGAAGATG ATTACGTGTC ACTGCCGGAA GCGACTAAGT 
250
CTAAAACCCA GGGCACGGGG AAAAAGAAGG GAATACCTTG GTCACCAGAA 
300
GAACACAGAT TGTTTTTGGA TGGACTAAAC AAGTATGGGA AAGGAGATTG 
350
GAAGAGCATA TCGAGGGAAT GTGTGACGTC AAGGAGCCCG ATGCAAGTGG 
400
CAAGCCATGC TCAGAAGTAT TTCTTAAGGC AAAAAAATAA GAAGGGGAAA 
450
CGCTTCAGTA TCCATGATAT GACTCTGGGA GATGCCGAAA ATGTAACCGT 
500
CCCTGTATCC AACTTGAATT CTATGGGCCA GCAGCCACAT TTTGATGACC 
550
AAAGTCCTCC GGATCATTAT CAAGACTACT TCTCCCAGAG CAATGTAACC 
600
ATCCCTGGAT GCAACATGCA CTTTATGGGC CAGCAACCAC GTTTTGGTGA 
650
CCAAATTCCT CCGGGTGAAT ATCACCCCTA CTCCCGGGAC AATGTAACCG 
700
TCACTGGATC CAACTTGAAT TCTATTGGCC AGCAGCCACA TTTTAATGAC 
750
CAAATTTCTC CGGATCAATA TGGCCGCTAC TTGCAGGAAA ACTTCGGGTT 
800
TTTCGATGAT GATGGTGAAG ATGATGGGAG TTTAGCAAGC TTTCAACAAC 
850
TATACAAGGC TTAA
900

>AT3G10580.1 longest ORF length:287
MDAAIPIWKR DDDKRFELAL VRFPAEGSPD FLENIAQFLQ KPLKEVYSYY 
50
QALVDDVTLI ESGKYPLPKY PEDDYVSLPE ATKSKTQGTG KKKGIPWSPE 
100
EHRLFLDGLN KYGKGDWKSI SRECVTSRSP MQVASHAQKY FLRQKNKKGK 
150
RFSIHDMTLG DAENVTVPVS NLNSMGQQPH FDDQSPPDHY QDYFSQSNVT 
200
IPGCNMHFMG QQPRFGDQIP PGEYHPYSRD NVTVTGSNLN SIGQQPHFND 
250
QISPDQYGRY LQENFGFFDD DGEDDGSLAS FQQLYKA
300