fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G10590 Duplicated homeodomain-like superfamily protein (.1)

>AT3G10590.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AciI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DdeI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MslI, MspA1I, MwoI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 531
AccIII(BspMII) T|CCGGA 69, 570
AflIII A|CPuPyGT 233
AluI AG|CT 49, 391
AlwNI CAGNNN|CTG 103, 196, 551
ApoI Pu|AATTPy 414
AvaI C|PyCGPuG 271
BalI TGG|CCA 248
BsaAI PyAC|GTPu 277
BsaBI GATNN|NNATC 161, 260, 581
BsaJI C|CNNGG 334, 436, 536, 591
BsaWI [AT]|CCGG[AT] 69, 570
BslI CCNNNNN|NNGG 310, 552, 591
BsoBI C|PyCGPuG 271
BspEI T|CCGGA 69, 570
BsrI ACTGGN| 285
BstF5I GGATGNN| 574
BstXI CCANNNNN|NTGG 334
BtgI C|CPuPyGG 436
DpnI GA-CH3|TC 581
DpnII |GATC 581
EaeI Py|GGCCPu 248
HaeIII GG|CC 247
HincII GTPy|PuAC 151, 402
HinfI G|ANTC 8, 291, 296, 431, 528, 549
HpaII C|CGG 68, 502, 569
Hpy188I TCN|GA 263, 480, 560
Hpy99I CG[AT]CG| 397
HpyCH4III ACN|GT 458
HpyCH4IV A|CGT 276, 398
HpyCH4V TG|CA 198, 363, 454
MboI |GATC 581
MscI TGG|CCA 248
MseI T|TAA 42, 258
MspI C|CGG 68, 502, 569
N.BstNBI GAGTCNNNN|N 13, 301, 533
NlaIII CATG| 232, 452
NspI PuCATG|Py 233
PciI A|CATGT 233
PflMI CCANNNN|NTGG 552
PstI CTGCA|G 199
RsaI GT|AC 130, 229, 235, 274, 278
Sau3AI |GATC 581
ScaI AGT|ACT 131
SfcI C|TPuPyAG 199
SnaBI TAC|GTA 277
StyI C|C[AT][AT]GG 334, 591
Taqƒ¿I T|CGA 5, 293, 395
TfiI G|A[AT]TC 291, 549
Tsp45I |GT[CG]AC 186
Tsp509I |AATT 60, 413
TspRI NNCA[CG]TGNN| 285


Click here to view TAIR data

>AT3G10590.1 length:621
ATGGCTTCGA GTCCACGCTG GACGGAGGAC GACAACAGGC GTTTTAAGTC 
50
AGCTCTGTCG CAATTCCCTC CGGATAACAA GCGTTTGGTG AATGTCGCCC 
100
AGCATCTGCC GAAACCTTTG GAGGAGGTGA AGTACTACTA CGAAAAGTTG 
150
GTCAACGATG TTTATCTGCC GAAACCTTTA GAGAATGTCA CCCAGCATCT 
200
GCAGAAACCT ATGGAAATGG AGGAGATGAA GTACATGTAC GAAAAGATGG 
250
CCAACGATGT TAATCAGATG CCCGAGTACG TACCACTGGC GGAATCGAGT 
300
CAGTCCAAAC GCAGGAAGAA GGATACGCCA AATCCTTGGA CAGAAGAGGA 
350
ACACAGATTG TTTCTGCAAG GATTGAAAAA GTATGGGGAA GGAGCTTCGA 
400
CGTTGACATC AACGAATTTT GTGAAGACAA AGACTCCACG GCAAGTGTCA 
450
AGCCATGCAC AGTATTACAA AAGGCAAAAA TCGGACAATA AGAAGGAGAA 
500
ACGCCGGAGT ATTTTTGACA TAACTTTGGA GTCTACCGAG GGCAATCCAG 
550
ATTCTGGAAA TCAGAACCCT CCGGATGATG ATGATCCGTC CCAAGGTCAA 
600
GGCACTTGTC TTGGAGTTTA G
650

>AT3G10590.1 longest ORF length:206
MASSPRWTED DNRRFKSALS QFPPDNKRLV NVAQHLPKPL EEVKYYYEKL 
50
VNDVYLPKPL ENVTQHLQKP MEMEEMKYMY EKMANDVNQM PEYVPLAESS 
100
QSKRRKKDTP NPWTEEEHRL FLQGLKKYGE GASTLTSTNF VKTKTPRQVS 
150
SHAQYYKRQK SDNKKEKRRS IFDITLESTE GNPDSGNQNP PDDDDPSQGQ 
200
GTCLGV
250