Locus |
Common name |
Short description |
AT3G10590 |
|
Duplicated homeodomain-like superfamily protein (.1) |
>AT3G10590.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AciI, AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DdeI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MslI, MspA1I, MwoI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
531 |
AccIII(BspMII)
| T|CCGGA |
69, 570 |
AflIII
| A|CPuPyGT |
233 |
AluI
| AG|CT |
49, 391 |
AlwNI
| CAGNNN|CTG |
103, 196, 551 |
ApoI
| Pu|AATTPy |
414 |
AvaI
| C|PyCGPuG |
271 |
BalI
| TGG|CCA |
248 |
BsaAI
| PyAC|GTPu |
277 |
BsaBI
| GATNN|NNATC |
161, 260, 581 |
BsaJI
| C|CNNGG |
334, 436, 536, 591 |
BsaWI
| [AT]|CCGG[AT] |
69, 570 |
BslI
| CCNNNNN|NNGG |
310, 552, 591 |
BsoBI
| C|PyCGPuG |
271 |
BspEI
| T|CCGGA |
69, 570 |
BsrI
| ACTGGN| |
285 |
BstF5I
| GGATGNN| |
574 |
BstXI
| CCANNNNN|NTGG |
334 |
BtgI
| C|CPuPyGG |
436 |
DpnI
| GA-CH3|TC |
581 |
DpnII
| |GATC |
581 |
EaeI
| Py|GGCCPu |
248 |
HaeIII
| GG|CC |
247 |
HincII
| GTPy|PuAC |
151, 402 |
HinfI
| G|ANTC |
8, 291, 296, 431, 528, 549 |
HpaII
| C|CGG |
68, 502, 569 |
Hpy188I
| TCN|GA |
263, 480, 560 |
Hpy99I
| CG[AT]CG| |
397 |
HpyCH4III
| ACN|GT |
458 |
HpyCH4IV
| A|CGT |
276, 398 |
HpyCH4V
| TG|CA |
198, 363, 454 |
MboI
| |GATC |
581 |
MscI
| TGG|CCA |
248 |
MseI
| T|TAA |
42, 258 |
MspI
| C|CGG |
68, 502, 569 |
N.BstNBI
| GAGTCNNNN|N |
13, 301, 533 |
NlaIII
| CATG| |
232, 452 |
NspI
| PuCATG|Py |
233 |
PciI
| A|CATGT |
233 |
PflMI
| CCANNNN|NTGG |
552 |
PstI
| CTGCA|G |
199 |
RsaI
| GT|AC |
130, 229, 235, 274, 278 |
Sau3AI
| |GATC |
581 |
ScaI
| AGT|ACT |
131 |
SfcI
| C|TPuPyAG |
199 |
SnaBI
| TAC|GTA |
277 |
StyI
| C|C[AT][AT]GG |
334, 591 |
Taqƒ¿I
| T|CGA |
5, 293, 395 |
TfiI
| G|A[AT]TC |
291, 549 |
Tsp45I
| |GT[CG]AC |
186 |
Tsp509I
| |AATT |
60, 413 |
TspRI
| NNCA[CG]TGNN| |
285 |
Click here to view TAIR data
>AT3G10590.1 length:621
ATGGCTTCGA GTCCACGCTG GACGGAGGAC GACAACAGGC GTTTTAAGTC | 50 |
AGCTCTGTCG CAATTCCCTC CGGATAACAA GCGTTTGGTG AATGTCGCCC | 100 |
AGCATCTGCC GAAACCTTTG GAGGAGGTGA AGTACTACTA CGAAAAGTTG | 150 |
GTCAACGATG TTTATCTGCC GAAACCTTTA GAGAATGTCA CCCAGCATCT | 200 |
GCAGAAACCT ATGGAAATGG AGGAGATGAA GTACATGTAC GAAAAGATGG | 250 |
CCAACGATGT TAATCAGATG CCCGAGTACG TACCACTGGC GGAATCGAGT | 300 |
CAGTCCAAAC GCAGGAAGAA GGATACGCCA AATCCTTGGA CAGAAGAGGA | 350 |
ACACAGATTG TTTCTGCAAG GATTGAAAAA GTATGGGGAA GGAGCTTCGA | 400 |
CGTTGACATC AACGAATTTT GTGAAGACAA AGACTCCACG GCAAGTGTCA | 450 |
AGCCATGCAC AGTATTACAA AAGGCAAAAA TCGGACAATA AGAAGGAGAA | 500 |
ACGCCGGAGT ATTTTTGACA TAACTTTGGA GTCTACCGAG GGCAATCCAG | 550 |
ATTCTGGAAA TCAGAACCCT CCGGATGATG ATGATCCGTC CCAAGGTCAA | 600 |
GGCACTTGTC TTGGAGTTTA G | 650 |
>AT3G10590.1 longest ORF length:206
MASSPRWTED DNRRFKSALS QFPPDNKRLV NVAQHLPKPL EEVKYYYEKL | 50 |
VNDVYLPKPL ENVTQHLQKP MEMEEMKYMY EKMANDVNQM PEYVPLAESS | 100 |
QSKRRKKDTP NPWTEEEHRL FLQGLKKYGE GASTLTSTNF VKTKTPRQVS | 150 |
SHAQYYKRQK SDNKKEKRRS IFDITLESTE GNPDSGNQNP PDDDDPSQGQ | 200 |
GTCLGV | 250 |
|