fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G11090 LBD21 LOB domain-containing protein 21 (.1)

>AT3G11090.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HpaII, HphI, Hpy188I, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tsp509I, TspRI, Tth111I, XbaI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 444
AciI C|CGC 94
AluI AG|CT 23, 45, 159, 220, 294, 310, 387
AvaI C|PyCGPuG 292
BamHI G|GATCC 240
BfaI C|TAG 308
BsaJI C|CNNGG 209
BslI CCNNNNN|NNGG 249, 343
BsoBI C|PyCGPuG 292
BstF5I GGATGNN| 376
BstYI Pu|GATCPy 240
Cac8I GCN|NGC 40, 145, 319, 390
DdeI C|TNAG 223, 385
DpnI GA-CH3|TC 18, 239, 305, 404, 470
DpnII |GATC 18, 239, 305, 404, 470
Fnu4HI GC|NGC 36, 393
HincII GTPy|PuAC 202, 349
HindIII A|AGCTT 160
HinfI G|ANTC 378
HpaI GTT|AAC 202
HpyCH4III ACN|GT 198, 250
HpyCH4IV A|CGT 150
HpyCH4V TG|CA 34, 41, 62, 74, 254, 276
MboI |GATC 18, 239, 305, 404, 470
MseI T|TAA 201
MwoI GCNNNNN|NNGC 219
NlaIII CATG| 8
NlaIV GGN|NCC 142, 240, 262
PaeR7I C|TCGAG 292
PstI CTGCA|G 277
RsaI GT|AC 410
Sau3AI |GATC 18, 239, 305, 404, 470
SfcI C|TPuPyAG 277
SmlI C|TPyPuAG 99, 235, 292
StyI C|C[AT][AT]GG 209
Taqƒ¿I T|CGA 291, 325
TfiI G|A[AT]TC 378
TliI C|TCGAG 292
TseI G|C[AT]GC 36, 393
Tsp45I |GT[CG]AC 103, 421
XcmI CCANNNNN|NNNNTGG 138
XhoI C|TCGAG 292


Click here to view TAIR data

>AT3G11090.1 length:498
ATGAGAGGGC ATGAGCCACG ATCAAGCTCA TCTTGTGCAG CCTGCAAGCT 
50
CTTGAAGAGA CGATGCACAC CCACTTGCAT TTTCGCTCCT TATTTCCGCT 
100
CAAGTGACTT GATAACTTTC GCCAAAGTCC ATAAAGTCTT TGGAGCCAGC 
150
AACGTCAGTA AGCTTCTCGG TGAAGTTCCT GAAGAACAGA GACAAGAAAC 
200
CGTTAACTCC TTGGCTTATG AAGCTGAGGT TCGTCTCAAG GATCCTGTTT 
250
ACGGTTGCAT TGGAGCCATA GCGTCTCTGC AGAAGAAGAT GCTCGAGCTT 
300
CAACACGATC TAGCTGTTGC TCGCACTCGA CTACTTGCCC ATTCTGGGGT 
350
CAACAACAGC CAAGTGTCCC CTTTGGATGA TTCTCCTGAG CTTGCTGCTT 
400
TTCTTGATCT TGTACCTTAT AGTGACTTGA TGTTGCTTGA TGGGTCTACT 
450
AATCTTGATG CTTACTTGTA TGATCTTGGA CAGCCTCCTT TTGTATAG
500

>AT3G11090.1 longest ORF length:165
MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDLITF AKVHKVFGAS 
50
NVSKLLGEVP EEQRQETVNS LAYEAEVRLK DPVYGCIGAI ASLQKKMLEL 
100
QHDLAVARTR LLAHSGVNNS QVSPLDDSPE LAAFLDLVPY SDLMLLDGST 
150
NLDAYLYDLG QPPFV
200