fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G11090 LBD21 LOB domain-containing protein 21 (.1)

>AT3G11090.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AclI, AfeI, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspMI, BsrBI, BsrDI, BsrFI, BssHII, BstAPI, BstEII, BstXI, BstZ17I, BtrI, BtsI, Cfr10I, DraIII, EagI, EarI, EciI, EcoNI, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, NaeI, , NarI, NciI, NgoMIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PflMI, PleI, PmeI, PmlI, PspOMI, PvuI, SacI, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SpeI, SphI, SwaI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 1342
AccI GT|[AC][TG]AC 2282, 4477
AccII(FnuDII) CG|CG 2613, 5364
AccIII(BspMII) T|CCGGA 1103, 1762
AciI C|CGC 2175, 2612, 4127, 5851
AflII C|TTAAG 2939, 3238, 3516, 5376
AflIII A|CPuPyGT 1439, 2594
AluI AG|CT 84, 285, 315, 1070, 1368, 1719, 1812, 1882, 1914, 1938, 1986, 2162, 2343, 2515, 2849, 2965, 3518, 3560, 3624, 3712, 3827, 4056, 4078, 4192, 4253, 4327, 4343, 4420, 4561, 4812, 5032, 5425, 5588, 5619, 5664, 5772, 5908
AlwNI CAGNNN|CTG 5207
ApoI Pu|AATTPy 348, 1771, 2361, 3271, 3312, 3595, 4626, 4867, 5052
AvaI C|PyCGPuG 82, 624, 1888, 4325
AvaII G|G[AT]CC 1509, 1946, 3233, 4764, 5998
BalI TGG|CCA 1851
BamHI G|GATCC 4273
BanI G|GPyPuCC 3578
BclI T|GATCA 2735, 5047
BfaI C|TAG 162, 962, 1940, 1997, 2305, 2979, 3120, 4341, 5770
BglII A|GATCT 628, 1378
BlpI GC|TNAGC 2964
BsaAI PyAC|GTPu 1727
BsaBI GATNN|NNATC 3011, 5925
BsaHI GPu|CGPyC 1342
BsaJI C|CNNGG 1506, 2055, 4242, 4735, 4780
BsaWI [AT]|CCGG[AT] 1103, 1762, 2447, 2509, 5977, 5996, 6090
BsiHKAI G[AT]GC[AT]|C 1822, 4844, 5186
BslI CCNNNNN|NNGG 812, 1102, 1361, 4282, 4376
BsoBI C|PyCGPuG 82, 624, 1888, 4325
Bsp1286I G[GAT]GC[CAT]|C 1822, 3579, 4844, 5186
BspDI AT|CGAT 882, 5762, 6085
BspEI T|CCGGA 1103, 1762
BspHI T|CATGA 2255
BspT107I(HgiCI) G|G[TC][AG]CC 3578
BsrGI T|GTACA 2591, 5125
BsrI ACTGGN| 466, 1359
BssKI |CCNGG 999, 2004, 2054, 2193, 4981
BssSI C|TCGTG 1819
BstBI TT|CGAA 2021
BstF5I GGATGNN| 908, 4409
BstNI CC|[AT]GG 999, 2004, 2054, 2193, 4981
BstUI CG|CG 2613, 5364
BstYI Pu|GATCPy 628, 867, 932, 1378, 4273, 5433, 5926
Bsu36I CC|TNAGG 1330, 4961
BtgI C|CPuPyGG 1506
Cac8I GCN|NGC 1989, 2106, 2848, 4073, 4178, 4352, 4423, 5771
ClaI AT|CGAT 882, 5762, 6085
DdeI C|TNAG 153, 318, 738, 821, 936, 1293, 1329, 1534, 2963, 3563, 3967, 4256, 4418, 4717, 4960, 5093, 5146
DpnI GA-CH3|TC 289, 627, 734, 866, 931, 1377, 1384, 1662, 2734, 4051, 4272, 4338, 4437, 4503, 5046, 5166, 5390, 5432, 5763, 5787, 5925, 6086
DpnII |GATC 289, 627, 734, 866, 931, 1377, 1384, 1662, 2734, 4051, 4272, 4338, 4437, 4503, 5046, 5166, 5390, 5432, 5763, 5787, 5925, 6086
DraI TTT|AAA 675, 3133
DrdI GACNNNN|NNGTC 360
EaeI Py|GGCCPu 1851, 2268
EcoO109I PuG|GNCCPy 1947, 3234
EcoRI G|AATTC 4626
EcoRV GAT|ATC 781, 817
Fnu4HI GC|NGC 598, 2172, 2841, 4069, 4426, 4998, 5587
HaeIII GG|CC 1667, 1850, 1994, 2066, 2267, 3855, 4529, 4776, 4963
HhaI GCG|C 5365
HinP1I G|CGC 5365
HincII GTPy|PuAC 646, 697, 2282, 2466, 4235, 4382, 4947
HindIII A|AGCTT 1369, 1915, 4193
HinfI G|ANTC 185, 306, 401, 1037, 1090, 1118, 1157, 1429, 1543, 1683, 1784, 1890, 1928, 2185, 3789, 3930, 4411, 4747, 4972, 4987, 5074, 5730, 5759, 5800, 5936, 6015
HpaI GTT|AAC 2466, 4235
HpaII C|CGG 1102, 1761, 2446, 2508, 5976, 5995, 6089
Hpy188I TCN|GA 182, 864, 1206, 1292, 2321, 2353, 2414, 4643, 4744, 5077, 5094, 5262, 5756
Hpy99I CG[AT]CG| 1075, 1343, 2280, 5873
HpyCH4III ACN|GT 2753, 3384, 4231, 4283, 5099
HpyCH4IV A|CGT 966, 1341, 1413, 1439, 1726, 1899, 2462, 4183, 6079
HpyCH4V TG|CA 1238, 1498, 1990, 2087, 2645, 2839, 4067, 4074, 4095, 4107, 4287, 4309, 4570, 4635, 4996, 5162, 5200, 5628, 5672, 6097
MboI |GATC 289, 627, 734, 866, 931, 1377, 1384, 1662, 2734, 4051, 4272, 4338, 4437, 4503, 5046, 5166, 5390, 5432, 5763, 5787, 5925, 6086
MfeI C|AATTG 53, 125, 5626
MscI TGG|CCA 1851
MseI T|TAA 674, 2210, 2375, 2465, 2689, 2938, 3054, 3084, 3088, 3109, 3132, 3175, 3219, 3228, 3237, 3259, 3274, 3286, 3515, 3730, 3923, 4234, 4679, 5116, 5375, 5964, 6004
MslI CAPyNN|NNPuTG 1571, 2356, 4665, 4853, 5567
MspA1I C[AC]G|C[GT]G 286, 4562
MspI C|CGG 1102, 1761, 2446, 2508, 5976, 5995, 6089
MwoI GCNNNNN|NNGC 1820, 4252, 4569, 5627
N.BstNBI GAGTCNNNN|N 1895, 4752, 4977, 6020
NcoI C|CATGG 1506
NdeI CA|TATG 1170, 4661
NheI G|CTAGC 5771
NlaIII CATG| 1085, 1240, 1505, 1517, 1657, 2254, 2593, 2780, 3808, 3859, 4041, 4701, 4847, 4878, 4940
NlaIV GGN|NCC 203, 1874, 1946, 3578, 4175, 4273, 4295, 4923
NsiI ATGCA|T 1499, 4636
NspI PuCATG|Py 2594, 4702, 4848
PacI TTAAT|TAA 3088
PaeR7I C|TCGAG 82, 1888, 4325
PciI A|CATGT 2594
PflFI GACN|NNGTC 2083
PpuMI PuG|G[AT]CCPy 1947, 3234
PshAI GACNN|NNGTC 1346
PsiI TTA|TAA 2405, 3009, 3212
PspGI |CC[AT]GG 999, 2004, 2054, 2193, 4981
PstI CTGCA|G 2088, 4310, 5201
PvuII CAG|CTG 286, 4562
RsaI GT|AC 895, 1257, 1591, 1654, 1724, 2000, 2010, 2590, 3203, 3751, 4443, 4721, 5124, 5246, 6065
RsrII CG|G[AT]CCG 5999
SalI G|TCGAC 2282
Sau3AI |GATC 289, 627, 734, 866, 931, 1377, 1384, 1662, 2734, 4051, 4272, 4338, 4437, 4503, 5046, 5166, 5390, 5432, 5763, 5787, 5925, 6086
Sau96I G|GNCC 1509, 1946, 2067, 3233, 3856, 4764, 5998
ScaI AGT|ACT 1258, 1592
ScrFI CC|NGG 999, 2004, 2054, 2193, 4981
SfcI C|TPuPyAG 2088, 3748, 4310, 5201
SmlI C|TPyPuAG 82, 721, 1252, 1888, 2939, 3238, 3516, 4132, 4268, 4325, 5376, 5617, 5662
SnaBI TAC|GTA 1727
SspI AAT|ATT 2729, 3189, 3251
StuI AGG|CCT 1668, 1995, 4530
StyI C|C[AT][AT]GG 1506, 4242, 4735, 4780
Taqƒ¿I T|CGA 81, 194, 881, 1076, 1466, 1752, 1887, 2020, 2281, 2862, 3791, 4324, 4358, 5727, 5761, 5797, 5901, 6012, 6037, 6084
TfiI G|A[AT]TC 185, 306, 401, 1037, 1118, 1157, 1429, 1543, 1683, 1784, 1928, 2185, 4411, 4987, 5730, 5759, 5800, 5936
TliI C|TCGAG 82, 1888, 4325
TseI G|C[AT]GC 598, 2172, 2841, 4069, 4426, 4998, 5587
Tsp45I |GT[CG]AC 4136, 4454, 5006
Tsp509I |AATT 52, 124, 242, 347, 951, 1770, 2030, 2197, 2360, 2558, 2687, 2711, 2719, 3056, 3086, 3101, 3125, 3270, 3311, 3460, 3594, 3606, 3708, 3813, 4625, 4866, 5051, 5063, 5159, 5190, 5287, 5625, 5697, 5941, 6034
TspRI NNCA[CG]TGNN| 322, 466, 5209
Tth111I GACN|NNGTC 2083
XbaI T|CTAGA 963
XcmI CCANNNNN|NNNNTGG 4171
XhoI C|TCGAG 82, 1888, 4325
XmnI GAANN|NNTTC 63, 135, 4814


Click here to view TAIR data

>AT3G11090 genomic sequence (4034-4531,) length:6102
CTCACCTCCC TCCACCTGTC TTCTAATCAG TTTTCAGGTC AAATCCCGTC 
50
CTCAATTGGA AACCTTTCTC ATCTCACATC TCTCGAGCTT TCTTCTAATC 
100
AGTTTTCGGG TCAAATCCCG TCTTCAATTG GAAATCTTTC TAATCTCACC 
150
TTTCTCAGTC TCCCTAGTAA TGATTTCTTT GGTCAGATTC CATCTTCGAT 
200
TGGGAACCTT GCTCGTCTCA CCTATCTCTA CCTTTCTTAC AACAATTTCG 
250
TTGGTGAAAT CCCATCTTCT TTTGGCAATC TAAACCAGCT GATCGTCTTA 
300
CAGGTTGATT CCAATAAGCT CAGTGGAAAT GTTCCCATCT CACTACTGAA 
350
TTTGACGAGG TTGTCTGCTT TATTACTTTC CCACAATCAG TTCACAGGCA 
400
CGATTCCTAA TAACATCAGT TTACTATCAA ACTTGATGGA CTTTGAAGCA 
450
AGTAACAACG CTTTCACTGG AACTCTCCCT TCTTCTCTCT TCAACATTCC 
500
TCCTTTGATT AGACTTGATT TGAGCGATAA CCAACTCAAC GGCACTCTTC 
550
ATTTTGGGAA TATATCTTCA CCATCTAACC TACAATACCT TATCATTGGC 
600
AGCAACAACT TCATAGGGAC AATCCCGAGA TCTCTTTCCA GATTTGTCAA 
650
CCTCACGCTT TTTGACCTTT CCCATTTAAA CACCCAATGT CGCCCAGTTG 
700
ACTTTAGTAT CTTCTCGCAT CTCAAGTCGC TTGACGATCT TAGGCTATCC 
750
TATTTGACCA CCACTACGAT TGACTTGAAC GATATCTTAC CATATTTCAA 
800
GACGCTCCGT TCATTGGATA TCTCAGGCAA CCTTGTTTCA GCCACAAACA 
850
AGTCTTCAGT TTCTTCAGAT CCTCCTTCGC AATCGATACA ATCTTTGTAC 
900
TTGTCAGGAT GCGGTATCAC CGATTTTCCA GAGATCCTAA GAACACAACA 
950
CGAATTGGGG TTTCTAGACG TTTCCAACAA CAAAATCAAA GGTCAAGTTC 
1000
CTGGCTGGTT ATGGACGCTA CCAAACTTGT TCTACTTGAA TCTTTCCAAC 
1050
AACACTTTCA TCAGTTTTGA AAGCTCGTCG AAGAAACATG GACTCTCCTC 
1100
TGTCCGGAAA CCATCTATGA TTCACTTGTT TGCCTCCAAC AACAACTTCA 
1150
CGGGCAAGAT TCCTTCTTTC ATATGCGGGT TGCGTTCTCT AAACACTCTG 
1200
GATTTATCTG AAAACAACTA TAATGGTTCA ATCCCTCGTT GCATGGAAAA 
1250
ACTCAAGAGT ACTCTTTTCG TTCTAAACCT TCGTCAAAAT AATCTGAGTG 
1300
GAGGTCTTCC AAAGCATATA TTTGAAAGCC TAAGGTCGCT TGACGTCGGT 
1350
CATAACCTAC TGGTGGGAAA GCTTCCAAGA TCTTTGATCC GTTTCTCTAA 
1400
TCTTGAAGTT TTGAACGTGG AAAGCAACAG AATCAACGAC ACGTTTCCGT 
1450
TCTGGTTGAG TTCTCTGTCG AAGTTACAAG TTCTTGTATT ACGCTCCAAT 
1500
GCATTCCATG GACCAATACA TGAAGCCACA TTCCCTGAGT TGCGAATCAT 
1550
TGACATATCA CATAATCACT TCAATGGAAC TTTGCCAACA GAGTACTTTG 
1600
TGAAGTGGAG TGCTATGTCA TCACTTGGAA AAAACGAAGA CCAGTCTAAC 
1650
GAAAAGTACA TGGGATCAGG CCTTTACTAC CAAGATTCAA TGGTTTTGAT 
1700
GAATAAAGGT TTAGCGATGG AGCTGGTACG TATTCTAACA ATCTACACAG 
1750
CACTCGACTT TTCCGGAAAC AAATTTGAAG GAGAGATTCC AAAGTCCATT 
1800
GGTCTATTGA AAGAGCTTCT CGTGCTCAAC TTGTCAAACA ATGCTTTTGG 
1850
TGGCCACATC CCATCATCTA TGGGGAACCT GACAGCTCTC GAGTCATTGG 
1900
ACGTTTCCCA GAACAAGCTT ACAGGAGAGA TTCCACAAGA GCTAGGGGAC 
1950
CTTTCGTTCC TTGCGTATAT GAACTTCTCT CATAACCAGC TTGCAGGCCT 
2000
AGTACCAGGA GGTACGCAGT TTCGAAGGCA AAATTGCTCT GCCTTTGAGA 
2050
ATAACCTGGG ACTTTTTGGC CCTTCTCTTG ACGAAGTCTG CAGAGATAAA 
2100
CATACGCCAG CATCACAACA GAATGAAACG ACAGAAACAG AGGAAGAAGA 
2150
CGAAGAAGAG ATAAGCTGGA TAGCAGCCGC AATAGGATTC ATACCTGGAA 
2200
TTGTCTTTGG ATTAACGATT GGATACATAT TGGTTTCCTA CAAACCAGAG 
2250
TGGTTCATGA ACCCTTTTGG CCGAAACAAT CGTCGACGCA GAAACACCAC 
2300
CACCCACTAG agaggtaatg ttccgacttt tgaacgagtt tggtagcttt 
2350
ccatcagaat gaattttatt tctgttttaa caacttattt tcgttgttat 
2400
aggcttataa cctatctgaa taatctggaa gaggaaagtc aaagtaaccg 
2450
gacgaactcc ttgacgttaa ccaaccactc ttttagccat tttcaaatcc 
2500
agattgtttc cggtttagct tgtgtttttc tcttctactc tgtttttagc 
2550
caactttgta attgaacaac tctgtttttc gctctttaga tgtacatgta 
2600
aagttgtttt ttcccgcgag tttgttgtta tcatttcttt ccccattgca 
2650
ctctcgtatc taaaaatgta tgtctatttg ttcgtatcaa ttaagacgca 
2700
gaaatacaga gcaattatag aattggggaa tatttgatca aaaagccatt 
2750
tttactgtat tttgataaac taaaccttat acatggatat atttgaagtc 
2800
agttgtgtct ggttctttat tagacattta tctgctattt tgcagcagca 
2850
agctgtttca ttctcgacat tttcaagtag tttatacgag aatggagaag 
2900
tgtgttttga tgatgagttt ttgggttttt ggtaatggct taaggaaagg 
2950
gagtgattat atgctaagct ctgtgaacta ctagaaaagt ttaggtaagc 
3000
ctatgggatt ataatccata gtggaaaagg aatggaaagc attacatatt 
3050
acgatttaat ttatgaaatg acaagataag aagatttaat taagtaaatg 
3100
acaattcttt ttaagttgct actagcaatt tctttaaacc attacttgtt 
3150
tgtatattta tactcattca caaaggttaa gagataacaa tattatcgtt 
3200
ttgtgtactc attataaagg ttaaaagatt taaggtcctt aagatttatg 
3250
aatatttgat ttaacaaaag aaattttaag ttttgagtta agtttttctt 
3300
gttattggta taaattcaca accaaaatga atgatgagta gaagaggaag 
3350
ccaaagaaag aagagaaaat ggatagtgaa ggggacggtg gtgatggtgg 
3400
tgggcttctc attctctcac ttttcttgtc aaatgtcttg tcttctccat 
3450
ttccacactc caatttttat atgctacctg tgattttatt tattttatta 
3500
tttgactttc ttttgcttaa gctatgtata atctacaata agaaccacaa 
3550
aaagtgatat aagctcagtt ctatattggt gcccactttg taagaaattt 
3600
cctcttcaat ttggagcaaa gtgaaagcta ttttgtattt tgcttgattg 
3650
acttgtttcc actaatccaa aagtcttgct tctcttgttt cttcttctat 
3700
aaaagagaaa attagctgat gtgttgttac tttaactctc tctatctcta 
3750
tagtaccttt gatttttcaa tatatgatta tgatttatgg actcgaactc 
3800
acgaccaatc atgtaattag caaggaaaag ctcaaagcca acacaaatga 
3850
tgaataggcc catgccttgt cccatttgtt tccttctctc tattactttc 
3900
aaaaacactc ttcttcacaa aaagttaaaa gactcttatc aatatataaa 
3950
ggaagcacga gataaaactt agaaaaaacg agagcctaac atttaccacc 
4000
aaaaaatcaa aacaaacaaa caaaaagttt gagATGAGAG GGCATGAGCC 
4050
ACGATCAAGC TCATCTTGTG CAGCCTGCAA GCTCTTGAAG AGACGATGCA 
4100
CACCCACTTG CATTTTCGCT CCTTATTTCC GCTCAAGTGA CTTGATAACT 
4150
TTCGCCAAAG TCCATAAAGT CTTTGGAGCC AGCAACGTCA GTAAGCTTCT 
4200
CGGTGAAGTT CCTGAAGAAC AGAGACAAGA AACCGTTAAC TCCTTGGCTT 
4250
ATGAAGCTGA GGTTCGTCTC AAGGATCCTG TTTACGGTTG CATTGGAGCC 
4300
ATAGCGTCTC TGCAGAAGAA GATGCTCGAG CTTCAACACG ATCTAGCTGT 
4350
TGCTCGCACT CGACTACTTG CCCATTCTGG GGTCAACAAC AGCCAAGTGT 
4400
CCCCTTTGGA TGATTCTCCT GAGCTTGCTG CTTTTCTTGA TCTTGTACCT 
4450
TATAGTGACT TGATGTTGCT TGATGGGTCT ACTAATCTTG ATGCTTACTT 
4500
GTATGATCTT GGACAGCCTC CTTTTGTATA Ggccttatct ctctatcata 
4550
tatctcttta tcagctgtat ttgcactttg ctttacaagt tatctttgac 
4600
aatctaaagt ctgtccctaa tgtatgaatt ccagtatgca taatcagatg 
4650
cttacttcat catatgtatg aaaaagggtt ttaacttcaa aagtaaccat 
4700
cacatgcgat gagataactc aggtacaaga tgagccttgg aaggtcagag 
4750
tccttaccag ttttggacca agtggtaggc caaggtgagt aaagtgaggt 
4800
gttttagatg aagagcttct ttgtaagtca ggtatgaata ggagagcaca 
4850
tgcttatgtc atcccgaaat tctaccaaac atgaaacatt gatatatatg 
4900
cttctatgat gttctttttt gaggctccaa taatacagcc tcatgtgtca 
4950
actcgtctcc ctcaggccac aagagtcttg tcctggagat tccagagtgc 
5000
agcaaagtca cataagcaaa catccaaatc aatagcttgg tgggtttgat 
5050
caaattccaa actgaattat gaatgactct gataagagtt ctcctcagaa 
5100
ccgttctacg catcttgtta agtctgtaca cattcctgaa acctgcctaa 
5150
gcaaaagagt aattgcagat cacagaaaga gagatgagca caatttggaa 
5200
ctgcagacac tgatacacaa accatcatac attgatactt cacaaaagta 
5250
catcttgata tgtcagatac tatgagagtt cttttggtaa ttcgcattgc 
5300
tactaccaat gtaactctac aatgctaaaa aagagaatga aaaagaagaa 
5350
gaagaaaaaa agcatcgcgc tataacttaa gaaaacctaa agatcaataa 
5400
taataacatc ttctccaaat cgtatgagct ttagatccaa ccattgctcc 
5450
ttgcttcaca tcagtaactc ctccacaatc tacaatcCTA CAACTTCTTA 
5500
Cctatacaac aaacaaagca caactgaagt ttcagtaaac tcatcaatca 
5550
caacaaaaca cacataaaaa tgaaaacttt acCTGAAGCA GCTCTTCGTT 
5600
TCCCAAGTTT AGATTTCTCA AGCTCCAATT GCATCTCCAT CAACATATTC 
5650
ATTCGTTGTA ACTCAAGCTC CTTTGCAACT TCCATTCTCT GTTTCTCCAA 
5700
TTCAATCATC ATCTGTTGCT TCTTCCCCTC GATTCTCTCA AACGCTTCCC 
5750
CTAACTTCAG AATCGATCTC GCTAGCTCCC TAAAGGCTGA TCCTTCACTC 
5800
GAATCTACAT CTTCAACTTT ACGATGCTTC CTCACCACAA ATCCCCAATC 
5850
ACCCGCATCA TCATCATCTT CTTCGTCGTC ATCATCATCA TCATCATCGT 
5900
CATCGAGAGA GCTACCAGTT GATTTAGATC CAGTAGGATT CAAATTAGGG 
5950
TTCATCAACG CCGATTTAAC AACAGCACCG GACGATTTCT TCATAACCGG 
6000
ACCGATTAAG AAATCGAGTC TATCAAAGAA GCACCAATTC GATAAAGGTT 
6050
TCGCCTTTTC AGTTTTGTAC TTCTTCTTCA ACGTATCGAT CCGGTTTTTG 
6100
CA
6150