fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G11260 WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1)

>AT3G11260.1 CDS map

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Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TseI, Tsp45I, TspRI, Tth111I, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 468
AciI C|CGC 515
AluI AG|CT 23, 168, 418, 496, 536
ApoI Pu|AATTPy 378
BanII GPuGCPy|C 169
BclI T|GATCA 144, 273
BfaI C|TAG 231, 297, 420
BglII A|GATCT 158, 525
BsaAI PyAC|GTPu 29
BsaBI GATNN|NNATC 272
BsaHI GPu|CGPyC 468
BsaJI C|CNNGG 401
BsaWI [AT]|CCGG[AT] 372
BsiHKAI G[AT]GC[AT]|C 169
Bsp1286I G[GAT]GC[CAT]|C 169
BsrFI Pu|CCGGPy 121
BstYI Pu|GATCPy 158, 525
Cfr10I [AG]|CCGG[TC] 121
DdeI C|TNAG 126, 171
DpnI GA-CH3|TC 107, 143, 157, 272, 524
DpnII |GATC 107, 143, 157, 272, 524
EcoRI G|AATTC 378
HindIII A|AGCTT 24, 537
HinfI G|ANTC 74, 149, 221, 390
HpaII C|CGG 120, 371
Hpy188I TCN|GA 146, 152, 218
Hpy99I CG[AT]CG| 249, 466
HpyCH4III ACN|GT 81, 439
HpyCH4IV A|CGT 28, 247, 467
MboI |GATC 107, 143, 157, 272, 524
MseI T|TAA 533, 544
MspI C|CGG 120, 371
MwoI GCNNNNN|NNGC 31
NlaIII CATG| 489
RsaI GT|AC 436
SacI GAGCT|C 169
Sau3AI |GATC 107, 143, 157, 272, 524
StyI C|C[AT][AT]GG 401
Taqƒ¿I T|CGA 19, 115, 451, 529
TfiI G|A[AT]TC 74, 149, 221
Tsp509I |AATT 377
XcmI CCANNNNN|NNNNTGG 404
XmnI GAANN|NNTTC 205, 449


Click here to view TAIR data

>AT3G11260.1 length:549
ATGTCTTTCT CCGTGAAAGG TCGAAGCTTA CGTGGCAACA ATAACGGAGG 
50
AACGGGGACG AAGTGCGGGA GATGGAATCC AACGGTGGAG CAGTTGAAGA 
100
TATTGACTGA TCTGTTTCGA GCCGGTCTTA GAACTCCAAC AACTGATCAG 
150
ATTCAGAAGA TCTCTACGGA GCTCAGTTTC TACGGCAAGA TAGAGAGCAA 
200
GAATGTTTTC TATTGGTTTC AGAATCATAA GGCTAGGGAG AGGCAGAAAC 
250
GTCGTAAAAT CTCCATTGAT TTTGATCATC ATCATCATCA ACCATCAACT 
300
AGAGATGTTT TTGAAATAAG CGAAGAAGAT TGTCAAGAGG AAGAGAAGGT 
350
GATAGAGACA TTACAACTCT TTCCGGTGAA TTCATTTGAA GACTCCAACT 
400
CCAAGGTGGA CAAAATGAGA GCTAGAGGCA ATAACCAGTA CCGTGAATAT 
450
ATTCGAGAGA CCACCACGAC GTCGTTTTCT CCATACTCAT CATGTGGAGC 
500
TGAAATGGAA CATCCACCGC CATTAGATCT TCGATTAAGC TTTCTTTAA
550

>AT3G11260.1 longest ORF length:182
MSFSVKGRSL RGNNNGGTGT KCGRWNPTVE QLKILTDLFR AGLRTPTTDQ 
50
IQKISTELSF YGKIESKNVF YWFQNHKARE RQKRRKISID FDHHHHQPST 
100
RDVFEISEED CQEEEKVIET LQLFPVNSFE DSNSKVDKMR ARGNNQYREY 
150
IRETTTTSFS PYSSCGAEME HPPPLDLRLS FL
200