fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G11260 WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1)

>AT3G11260.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BsrBI, BsrDI, BssHII, BstEII, BstZ17I, BtsI, DraIII, DrdI, EagI, EarI, EciI, FauI, FokI, FseI, FspI, HaeII, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NgoMIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PleI, PmeI, PshAI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SapI, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, StuI, SwaI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 4607, 5579
AccI GT|[AC][TG]AC 3158, 5495
AccII(FnuDII) CG|CG 1405, 5532
AciI C|CGC 1202, 4654
AclI AA|CGTT 3175, 3495, 6332
AflII C|TTAAG 1367, 1532, 5081, 5723, 6106
AflIII A|CPuPyGT 288, 502, 3021, 4029, 6063
AhdI GACNNN|NNGTC 5195
AluI AG|CT 150, 154, 212, 317, 405, 1363, 1602, 2639, 3345, 4053, 4198, 4557, 4635, 4675, 5559, 5589, 5667, 5740, 6160
ApoI Pu|AATTPy 107, 326, 536, 576, 665, 960, 1318, 1491, 2224, 2756, 3091, 3142, 3149, 3442, 3631, 4517, 5059, 5375, 5395, 5716
AseI AT|TAAT 565, 1341, 3253, 5162, 5277, 6077
AvaI C|PyCGPuG 2193, 6090
AvaII G|G[AT]CC 2452, 5808, 6195
BanI G|GPyPuCC 5600
BanII GPuGCPy|C 4199
BclI T|GATCA 2314, 4174, 4303, 5090, 5356, 6034
BfaI C|TAG 152, 178, 711, 788, 1006, 1600, 1668, 2385, 2617, 2723, 2866, 2951, 3343, 3446, 3511, 3754, 4261, 4327, 4559, 4981, 5266, 5811
BglII A|GATCT 2838, 3378, 4188, 4664, 5649
BlpI GC|TNAGC 2470
BsaAI PyAC|GTPu 119, 423, 2286, 2574, 3579, 4059
BsaBI GATNN|NNATC 4302, 5165
BsaHI GPu|CGPyC 1430, 4607, 5579
BsaJI C|CNNGG 1811, 3531, 3677, 4540, 5517
BsaWI [AT]|CCGG[AT] 4511
BsiEI CGPuPy|CG 2708
BsiHKAI G[AT]GC[AT]|C 4199
BslI CCNNNNN|NNGG 1714, 1838, 4777, 4803, 5247, 5412
BsmI GAATGCN| 2729, 3687, 4859
BsoBI C|PyCGPuG 2193, 6090
Bsp1286I G[GAT]GC[CAT]|C 4199
BspDI AT|CGAT 1077
BspHI T|CATGA 3239
BspT107I(HgiCI) G|G[TC][AG]CC 5600
BsrFI Pu|CCGGPy 4151
BsrGI T|GTACA 2039, 2608, 6326
BsrI ACTGGN| 462, 2259
BssKI |CCNGG 25, 1845, 5294, 5363
BssSI C|TCGTG 5565
BstAPI GCANNNN|NTGC 2479
BstBI TT|CGAA 1618, 3924
BstF5I GGATGNN| 2264, 5417, 6005, 6223
BstNI CC|[AT]GG 25, 5294
BstUI CG|CG 1405, 5532
BstXI CCANNNNN|NTGG 5215
BstYI Pu|GATCPy 2838, 3378, 3693, 4188, 4664, 5649
Bsu36I CC|TNAGG 1458
BtgI C|CPuPyGG 3677
BtrI CAC|GTC 289
Cac8I GCN|NGC 153, 2102, 3344, 3672, 3830, 5529
Cfr10I [AG]|CCGG[TC] 4151
ClaI AT|CGAT 1077
DdeI C|TNAG 215, 438, 830, 1249, 1457, 1630, 2133, 2469, 2663, 2746, 4156, 4201, 4885, 5485, 5869, 6163
DpnI GA-CH3|TC 70, 198, 1074, 1322, 2313, 2837, 3377, 3692, 3779, 3794, 4137, 4173, 4187, 4302, 4663, 5089, 5355, 5462, 5639, 5648, 6033
DpnII |GATC 70, 198, 1074, 1322, 2313, 2837, 3377, 3692, 3779, 3794, 4137, 4173, 4187, 4302, 4663, 5089, 5355, 5462, 5639, 5648, 6033
DraI TTT|AAA 397, 687, 803, 1488, 2322, 4734, 4923, 5149, 5770, 6337
EaeI Py|GGCCPu 3290
EcoNI CCTNN|NNNAGG 1714
EcoO109I PuG|GNCCPy 3990, 6196
EcoRI G|AATTC 3091, 4517
EcoRV GAT|ATC 1999
Fnu4HI GC|NGC 2806
HaeIII GG|CC 3289, 3988, 5204, 5237, 5816
HhaI GCG|C 1404, 5531
HinP1I G|CGC 1404, 5531
HincII GTPy|PuAC 132, 655, 5495, 5576
HindIII A|AGCTT 406, 1364, 4054, 4676
HinfI G|ANTC 17, 1079, 2190, 2266, 3084, 3605, 4104, 4179, 4251, 4529, 4843, 5336, 5793, 6049
HpaII C|CGG 1845, 4150, 4510, 5363
Hpy188I TCN|GA 1248, 2821, 2835, 3087, 3094, 3539, 3654, 4023, 4176, 4182, 4248, 4770, 4991, 5129, 5322, 5552, 5653, 5710
Hpy99I CG[AT]CG| 1326, 4279, 4605, 5320, 5493, 5535
HpyCH4III ACN|GT 128, 861, 1033, 2051, 2373, 2578, 2776, 4005, 4111, 4578, 5572, 5903, 5915, 5986
HpyCH4IV A|CGT 118, 288, 422, 1127, 1675, 2285, 2573, 2847, 3174, 3494, 3578, 3997, 4058, 4277, 4606, 5578, 6331
HpyCH4V TG|CA 258, 747, 1312, 1464, 1472, 1725, 1889, 1944, 2099, 2333, 2480, 2625, 2729, 2784, 2923, 3200, 3317, 3669, 3788, 3831, 4774, 4800, 4966, 5116, 5751, 5899, 5949
MboI |GATC 70, 198, 1074, 1322, 2313, 2837, 3377, 3692, 3779, 3794, 4137, 4173, 4187, 4302, 4663, 5089, 5355, 5462, 5639, 5648, 6033
MfeI C|AATTG 595
MseI T|TAA 51, 170, 194, 203, 229, 396, 429, 532, 564, 624, 641, 686, 802, 871, 930, 1130, 1340, 1366, 1382, 1423, 1487, 1493, 1510, 1531, 1641, 1662, 1729, 1772, 1796, 2025, 2033, 2160, 2232, 2254, 2321, 2506, 2516, 2656, 2686, 2741, 2903, 2972, 3052, 3252, 3497, 3592, 3617, 3939, 4415, 4672, 4683, 4733, 4900, 4922, 4933, 4948, 5000, 5007, 5017, 5031, 5080, 5148, 5161, 5170, 5251, 5276, 5280, 5401, 5664, 5722, 5769, 5861, 6076, 6105, 6312, 6336
MslI CAPyNN|NNPuTG 1193, 3026
MspI C|CGG 1845, 4150, 4510, 5363
MwoI GCNNNNN|NNGC 1411, 2479, 4061, 5540
N.BstNBI GAGTCNNNN|N 3610, 6054
NciI CC|[CG]GG 1845, 5363
NcoI C|CATGG 3677
NdeI CA|TATG 3728, 6022
NheI G|CTAGC 153, 3344
NlaIII CATG| 8, 13, 304, 353, 501, 545, 637, 853, 1153, 2015, 2101, 2482, 2529, 2668, 2786, 3020, 3238, 3553, 3671, 3676, 3681, 3829, 4028, 4628, 4776, 4802, 5922, 6062
NlaIV GGN|NCC 924, 1828, 1842, 3652, 5600
NsiI ATGCA|T 259, 2785, 3670, 3832, 4775, 4801
NspI PuCATG|Py 502, 2016, 2102, 2483, 2669, 3021, 3672, 3830, 4029, 5923, 6063
PacI TTAAT|TAA 5280
PaeR7I C|TCGAG 2193
PciI A|CATGT 502, 3021, 4029, 6063
PflFI GACN|NNGTC 1676
PflMI CCANNNN|NTGG 1838, 4803, 5247
PmlI CAC|GTG 2286
PpuMI PuG|G[AT]CCPy 6196
PsiI TTA|TAA 1090, 1591, 2406, 2539, 2634, 3127, 3248, 5224, 5421
PspGI |CC[AT]GG 25, 5294
RsaI GT|AC 458, 1061, 1125, 1329, 2038, 2066, 2370, 2395, 2575, 2607, 2680, 3518, 4575, 5569, 5905, 6184, 6325
SacI GAGCT|C 4199
SalI G|TCGAC 5495
Sau3AI |GATC 70, 198, 1074, 1322, 2313, 2837, 3377, 3692, 3779, 3794, 4137, 4173, 4187, 4302, 4663, 5089, 5355, 5462, 5639, 5648, 6033
Sau96I G|GNCC 2452, 3989, 5205, 5238, 5808, 6195
ScaI AGT|ACT 2371, 2396
ScrFI CC|NGG 25, 1845, 5294, 5363
SmlI C|TPyPuAG 1367, 1532, 2193, 3182, 5081, 5312, 5388, 5723, 6106
SnaBI TAC|GTA 119, 423, 2574, 3579
SpeI A|CTAGT 712
SphI GCATG|C 2102, 3672, 3830
SspI AAT|ATT 76, 699, 1086, 1941, 2535, 2698, 2994, 3113, 3503, 5174
StyI C|C[AT][AT]GG 1811, 3531, 3677, 4540, 5517
Taqƒ¿I T|CGA 1076, 1617, 2192, 3490, 3873, 3923, 4049, 4145, 4590, 4668, 5071, 5452, 5494, 5637, 6051, 6205
TfiI G|A[AT]TC 17, 1079, 2266, 3084, 4104, 4179, 4251, 4843, 5336, 5793
TliI C|TCGAG 2193
TseI G|C[AT]GC 2806
Tsp45I |GT[CG]AC 2968, 3188, 3607, 5581
Tsp509I |AATT 3, 59, 106, 192, 296, 325, 454, 535, 562, 569, 575, 586, 594, 622, 630, 664, 683, 750, 824, 959, 1057, 1110, 1170, 1236, 1317, 1342, 1483, 1490, 1764, 1800, 2074, 2085, 2158, 2223, 2230, 2252, 2309, 2317, 2630, 2755, 2842, 2907, 3090, 3141, 3148, 3250, 3314, 3384, 3441, 3456, 3574, 3589, 3615, 3630, 3697, 3902, 3945, 4374, 4516, 4754, 4930, 5049, 5058, 5213, 5278, 5374, 5381, 5394, 5685, 5715, 5756, 5821, 5863, 6074
TspRI NNCA[CG]TGNN| 129, 5916, 5989
Tth111I GACN|NNGTC 1676
XbaI T|CTAGA 789, 2952
XcmI CCANNNNN|NNNNTGG 4543
XhoI C|TCGAG 2193
XmnI GAANN|NNTTC 714, 2960, 3631, 4235, 4588


Click here to view TAIR data

>AT3G11260 genomic sequence (4031-4334,4444-4688,) length:6358
ccctaatttc atgccatgaa tccatcctgg tttcctactt ttctgtttca 
50
ttttaatcct aatttatgtt ggatcaatat ttgataaata taaatcgggc 
100
atttctaaat ttgttacata cgtaaaacac tgttgacagg ttttgctgaa 
150
tagctagctg gttctgtatg gttaaagaac tagaaaagag tggaattaag 
200
atcgttaaga aaaagctaag gttttagagt ttaactatga aatatgtatg 
250
tatagattat gcattttcgt ttttggaggc tatcatcaca cgtctaaaat 
300
tagtccatgt gttgttagag ctgtcaaatt ttagttattg acaacactac 
350
tatacatggt attttctgga aaaatgtata taaaaaaaaa acacttttta 
400
aagtgaagct ttttattcca cttacgtatg ttaaagtgct tagaaaaaga 
450
taggaaattg tactggacat acagagaaga caaaggacaa agaagaccaa 
500
tacatgtcgc tactttttac aaatctctaa accttaaatt cttccccatg 
550
tatgcttgtg aacaattaat aatttgaatt tagatataat tcttcaattg 
600
cctttcaaaa tcattattca gcaaattaag taattcttca tgttaatagt 
650
aatcgttgac atccaaattt ggatatatat tgataattta aactaccaaa 
700
tattccaatg aactagttca tatcgtttgc taaataatgt tttctatatg 
750
caatttcgtg atatactaca aggttatatt tcaaagtttc tagaagcaaa 
800
cctttaaaat caaatcaaat atgaaaatta cttaggaaaa agttacacgc 
850
ttgacatgaa tacagtttct ttttaagatt tggtattagt tgaacctttt 
900
gatgagagta atggaaaaaa tatggaaccc attaaaaaaa gaagttagat 
950
aatactacaa aattcctacc acaaaagaaa agaagaagat aatactacaa 
1000
cattgaccta gtagttagag ccaccatacc caaactgttg tcgtatcaaa 
1050
tctttagtaa ttgtactatt ctaatgatcg attcaaatat tataatatag 
1100
agattataga taattgtata gatattgtac gttaaaagaa atatgtatat 
1150
attacatgga acatcatagg gaattgaatg ttagtggaca ttacgatgtg 
1200
agaccgcctt caactttttt gactacgata agaacacaat tctcgctgtc 
1250
tgagaagtct atatacaaat gaaacaactc caatgttatc tgtatataat 
1300
caataaatca tcttgcaaaa tttgatcgtc gtacttatat attaattact 
1350
aaatagccaa acaaagctta agttttgacc atcttaaaac actattattg 
1400
atgaagcgcg aaacgctata atcattaaag acgccaaact caaagtttct 
1450
tttctccctt aggtttgcaa ctttgcatct gtgtaatttt aaatttaact 
1500
acaaatacat attaaagtaa tcatatatga acttaagaac tatactttct 
1550
caaactaatg tgtcgttatg tttttgatag ttgttctttc ttataaatat 
1600
actagctcaa ctttttgttc gaaaagttgt ctcagcagtt acttaaatca 
1650
agagtgttgt ccattaaggc tagacaacgt ccataggtgt ttatagaaag 
1700
aaaaaaaacc ttccataggt ttccattgca ttaacacaaa cgggttgatt 
1750
gattgctctc tcgctaattt tttttaatac taatagtcat cataaactta 
1800
aaattagaaa ccaaggttgc tttttgaggt tcccaaaact tggaacccgg 
1850
acttgtgtaa aaagaaagaa aaaaacaacc caaaaaacta tgcaaagtag 
1900
tgaatgttgt ataaaagcat atatcacaac aacaaaaaag aatattgcaa 
1950
aaaaacaaag tatatgatat gtttgggggc atccaatacg agagttttga 
2000
tatctcaaat ccacgacatg ctatctttaa ctttttaatg tacaactcac 
2050
aactgtttta tcatccagta ccagtaattg atgactaatt gggtgctggg 
2100
tgcatgccac ttttttctat atatctaaca aatctaagtc ataaagtttc 
2150
tctaaaccga attaaatcca aaaatctact tatttagtta gactcgagag 
2200
taggtaatga gatattctgt aagaaatttg taattaaaca aagatgttat 
2250
gtaaattaac tgggatgatt ccaagtaaca taagccacgt gaactttgac 
2300
tttgacaccg aattgatcaa ttttaaaaac aagatgcagt ttatatgcga 
2350
gagagacaaa gatatttgta agtactgtta tgttgtctag tgaagagtac 
2400
tttgtttata aaaacaatgt ttggttttat tcacattgtc attttattat 
2450
ttggaccatt ttcgtcttgc ttagcatccc gtgcatgtct catctaaatc 
2500
ctcactatta agacatttta acgcacacta catgaatatt ataagttttt 
2550
cctttctatt tctgctggtg tcatacgtac tgttcatata gacatcaata 
2600
agtttcttgt acaaacaact agactatgca aaattataag agctggattg 
2650
tatattgtta aaactgaggc atgtatgagt tgtacgctta aaagtgaaat 
2700
attttttcgg tcgcaggtta tatactagaa tgcagttaga ttttaactaa 
2750
gaaataaatt tttgaccaaa gcatttacag tataatgcat gatttatgtt 
2800
actattgctg ctgtctcatt ttcagatttc aaaaatcaga tctaattgac 
2850
gtgatagcat atagaggcta gtaaaacact atgagtttat acttttattg 
2900
atggttaaaa ttatttttac atcttgcagt catctttcaa ccattcttca 
2950
ttctagaagg agttcttggt gacttaataa atggcttttt acaaatattt 
3000
tggtgtagga cttatattat acatgtgtgt ggcgaacctt ctggttctat 
3050
ctattaaatg ccttttcttt ttgtagtttt ttatgattca gaattcagat 
3100
atttgatttt gtaatattat attttcttat aaaagagaat aaaatttcaa 
3150
atttcctgtc tacacttgcc gaccaacgtt cctcaagtgt cacatcttct 
3200
gtgcaagaga gacaaaacta caatctgttc acacaatgtc atgatgttta 
3250
taattaatct tatcatcttc attcatatca aactaatatc ggccatccat 
3300
ccgtctcaat aatgtaattg catacaatct ttgtttagga cttgctagct 
3350
atttcaactt attattgatt acagattaga tctacaattt gtaaagaact 
3400
tctaacttca aaacaaatac aaaaaaaaga aagtgaatgt aaaatttcta 
3450
gtgtcataat ttggaatagt tgaagcattg aagttacaat atcgaacgtt 
3500
aaaatattga cactagatag tacattacca ccaaggcttt ctgattattc 
3550
ttatcatgtt atatgaatag taagaaatta cgtagaacgc aatttaagtg 
3600
tgtgcgagtc accacaaatt aaaggagaac aaattcaatg tttcaatcgc 
3650
tggttccgat atacaactta tgcatgccat ggcatgaatg cgagatccaa 
3700
ttatatacta atatatacac acaaaaacat atgtaaatat agatggaaca 
3750
gaagcctaga taggttagga taaagaaaac gatcaaatct gcaaagatca 
3800
gtctctccca aatccccaaa aaaaacaaag catgcatttc gtaataaaca 
3850
actcatcata aaacgacaca taactcgaaa acctctcctc ccgacatttc 
3900
atcaattcat ttctcttttt attttcgaaa agatgaaaac ttaataaatt 
3950
attatgaaca atcttactat atatatggat atatacacag gccctaaaac 
4000
gtaaaacagt tgaggacttt acatctgaac ATGTCTTTCT CCGTGAAAGG 
4050
TCGAAGCTTA CGTGGCAACA ATAACGGAGG AACGGGGACG AAGTGCGGGA 
4100
GATGGAATCC AACGGTGGAG CAGTTGAAGA TATTGACTGA TCTGTTTCGA 
4150
GCCGGTCTTA GAACTCCAAC AACTGATCAG ATTCAGAAGA TCTCTACGGA 
4200
GCTCAGTTTC TACGGCAAGA TAGAGAGCAA GAATGTTTTC TATTGGTTTC 
4250
AGAATCATAA GGCTAGGGAG AGGCAGAAAC GTCGTAAAAT CTCCATTGAT 
4300
TTTGATCATC ATCATCATCA ACCATCAACT AGAGgtagtc tctttatata 
4350
tatatatata tatatatata tatataatta tatatcatta ttgttttata 
4400
tgatatttct atatatttaa tggataatag tgtgttatta tagATGTTTT 
4450
TGAAATAAGC GAAGAAGATT GTCAAGAGGA AGAGAAGGTG ATAGAGACAT 
4500
TACAACTCTT TCCGGTGAAT TCATTTGAAG ACTCCAACTC CAAGGTGGAC 
4550
AAAATGAGAG CTAGAGGCAA TAACCAGTAC CGTGAATATA TTCGAGAGAC 
4600
CACCACGACG TCGTTTTCTC CATACTCATC ATGTGGAGCT GAAATGGAAC 
4650
ATCCACCGCC ATTAGATCTT CGATTAAGCT TTCTTTAAgt cattgaccac 
4700
aataacaaaa gaaaaaaaac agatgcttta gcctttaaaa tgttgttgta 
4750
ttttgaatta tgacatatta tccgatgcat ggtttatgag atattttcca 
4800
atgcatggtt tatcaaaaag ttgtctcatt ttgtttgata taagaatcta 
4850
tgttatggaa tgcgtatatg tatatcatca tataactaag gttgtgattt 
4900
gttaatgtat ttttctatat tttttaaaaa taatttaaga aagacatcat 
4950
taacgaatag ttctatttgc atcacagaaa tactagaaat atcagataaa 
5000
cttaaaactt aaaagatgtt aaaaaaacaa acttaaaact tatctctatc 
5050
aatttacaaa atttacatca tctcgaaata cttaagtctt gatcaacaac 
5100
cattagacca aaaaacttgc acaatcttat cagaataaaa ccaactcttt 
5150
taaacgaaca gattaatatc cttaatatta ttttacccag acccattgtc 
5200
ttttaggccc atataattgg gctttataat acagagaagg cccaaacttt 
5250
ggttaaaccc atagtgccta gagaagatta attaaagggg ttttcctgga 
5300
gaagaagcaa actcaagttc cgtcggagat aaaacggaat caaaagttga 
5350
ggttttgatc attcccggag aaagaaattt agaattactc aagcgaattt 
5400
gattaaccca acaATGGATG TTATAAAGAC GCAACAAATA TCGGCAAGGA 
5450
CAATCGAGAA AGTGATCGTT CACCCACTTG TCTTGCTTAG TATCGTCGAC 
5500
CATTACAATC GTGTAGCCAA GGACACGAGC AAGCGCGTCG TCGGCGTTTT 
5550
GCTCGGAAGT AGCTCTCGTG GTACTGTTGA CGTCACCAAC AGCTACGCAG 
5600
gtgccttgat tttacttttt cctttctctt tgttctcttc gatctcacag 
5650
atctctgaaa gtttgttaag ctcttgctaa tctcataatt caatatgttt 
5700
agtgttcttg tctgaaaatt tacttaagtt tagttttttt tagcttttgg 
5750
gttgcaaaat tgtcttactt ttaaaatcgt tgtgtgatac ttggattcag 
5800
tcaaacttgg tcctagtggc ctaattccat attggagtga tgagtataat 
5850
atggtggttg agttaatttc ttagagaatg aaacagattt catttgattt 
5900
tgcacagtac attacactgt gagcatgttc ataagtgcgt tgttgttact 
5950
tgcacatcac ttgtttgact ttttgtttgt ggttttacag TGCCTTTTGA 
6000
GGAGGATGAC AAAGACACAA GCATATGGTT TCTTGATCAC AACTACCACG 
6050
AGTCGATGTT TCACATGTTC AAGAGAATTA ATGgtattgc tcgggaaata 
6100
taatgcttaa gagtatatat gtggaaagcc tcttttttga ctgattttca 
6150
tatttgcttt cagCTAAGGA GCATATTGTG GGTTGGTACA GCACAGGTCC 
6200
TAAACTTCGA GAGAATGATT TGGATGTTCA CGCTTTATTC AATGGgtaag 
6250
accaaaatca gtctaaaata tgagatatga tggtctaatc taatatatgg 
6300
tttggtggtc tgtttaagtt atatatgtac aaacgtttta aagcattcac 
6350
aatctatc
6400