fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G11280 Duplicated homeodomain-like superfamily protein (.1.2)

>AT3G11280.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
HindIII A|AGCTT 229
PstI CTGCA|G 287
SacI GAGCT|C 128
StyI C|C[AT][AT]GG 302, 382, 539
XhoI C|TCGAG 81


Click here to view TAIR data

>AT3G11280.1 length:792
ATGGAGACTC TGCATCCATT CTCTCACCTA CCTATCTCTG ACCACCGGTT 
50
CGTTGTTCAA GAGATGGTGA GCTTACACAG CTCGAGTAGC GGTAGCTGGA 
100
CTAAAGAAGA GAACAAGATG TTCGAACGAG CTCTTGCGAT ATACGCTGAA 
150
GACTCGCCTG ATCGCTGGTT TAAAGTTGCT TCCATGATCC CTGGAAAGAC 
200
TGTTTTTGAT GTTATGAAGC AATATAGTAA GCTTGAAGAA GACGTTTTCG 
250
ATATTGAAGC AGGACGTGTT CCCATTCCTG GTTATCCTGC AGCTTCTTCT 
300
CCCTTGGGGT TTGACACGGA CATGTGTCGT AAACGGCCTA GTGGAGCTAG 
350
AGGATCTGAT CAAGATCGAA AGAAAGGAGT CCCTTGGACA GAGGAAGAAC 
400
ACAGGAGATT CTTGTTAGGC CTTCTCAAGT ACGGTAAAGG AGATTGGAGA 
450
AACATATCGA GAAACTTCGT GGTGTCAAAG ACGCCAACGC AAGTGGCGAG 
500
CCACGCCCAA AAGTATTACC AGAGACAGCT CTCCGGAGCC AAGGACAAAC 
550
GCAGGCCAAG TATCCATGAC ATCACAACCG GCAATCTTCT CAATGCCAAT 
600
CTCAACCGTT CCTTTTCCGA TCATAGAGAT ATTCTCCCTG ATTTAGGGTT 
650
TATCGATAAG GATGATACGG AGGAGGGAGT AATATTTATG GGTCAGAATC 
700
TCTCTTCAGA AAATCTGTTT TCTCCATCAC CAACTTCATT CGAAGCTGCC 
750
ATTAACTTCG CCGGAGAAAA TGTCTTCAGT GCCGGAGCTT AA
800

>AT3G11280.1 longest ORF length:263
METLHPFSHL PISDHRFVVQ EMVSLHSSSS GSWTKEENKM FERALAIYAE 
50
DSPDRWFKVA SMIPGKTVFD VMKQYSKLEE DVFDIEAGRV PIPGYPAASS 
100
PLGFDTDMCR KRPSGARGSD QDRKKGVPWT EEEHRRFLLG LLKYGKGDWR 
150
NISRNFVVSK TPTQVASHAQ KYYQRQLSGA KDKRRPSIHD ITTGNLLNAN 
200
LNRSFSDHRD ILPDLGFIDK DDTEEGVIFM GQNLSSENLF SPSPTSFEAA 
250
INFAGENVFS AGA
300