fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G12480 NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1)

>AT3G12480.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 810
NcoI C|CATGG 305
NdeI CA|TATG 149
PstI CTGCA|G 752
PvuII CAG|CTG 29
SacI GAGCT|C 186
StyI C|C[AT][AT]GG 279, 305


Click here to view TAIR data

>AT3G12480.1 length:882
ATGAGGAAGA AGCTCGATAC TCGGTTCCCA GCTGCTCGTA TTAAAAAGAT 
50
TATGCAAGCT GATGAGGATG TTGGCAAGAT AGCTTTGGCA GTGCCTGTCT 
100
TAGTCTCAAA ATCTTTGGAG TTGTTCTTGC AAGACCTTTG TGATCGTACA 
150
TATGAAATTA CCCTTGAAAG AGGTGCCAAG ACTGTGAGCT CATTGCACCT 
200
AAAACATTGT GTGGAAAGAT ATAACGTGTT TGATTTTCTG AGGGAAGTTG 
250
TGAGTAAGGT GCCTGACTAT GGCCATTCCC AAGGGCAAGG ACATGGTGAT 
300
GTTACCATGG ATGATCGCAG CATCTCCAAG AGAAGGAAGC CCATCAGCGA 
350
TGAAGTGAAT GACAGTGACG AGGAATATAA GAAAAGCAAA ACGCAAGAGA 
400
TAGGGAGTGC TAAGACCAGT GGCAGGGGTG GTAGAGGAAG AGGGCGAGGA 
450
AGAGGTCGTG GTGGACGAGC TGCAAAAGCA GCCGAAAGAG AGGGTCTCAA 
500
CCGCGAGATG GAAGTAGAAG CCGCCAATTC TGGACAGCCA CCACCAGAAG 
550
ACAATGTCAA GATGCATGCG TCAGAGTCAT CACCACAAGA GGATGAGAAG 
600
AAAGGCATCG ACGGCACAGC AGCATCGAAC GAAGACACCA AGCAACACCT 
650
TCAAAGTCCC AAAGAAGGCA TTGACTTTGA TCTCAACGCT GAATCCCTCG 
700
ACCTAAACGA GACCAAACTG GCACCAGCCA CAGGCACAAC CACAACCACA 
750
ACTGCAGCAA CAGACTCTGA GGAGTATTCG GGCTGGCCTA TGATGGACAT 
800
AAGCAAAATG GATCCAGCAC AGCTTGCTAG TCTGGGTAAG AGGATAGACG 
850
AGGATGAGGA AGATTATGAC GAAGAAGGCT AA
900

>AT3G12480.1 longest ORF length:293
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT 
50
YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD 
100
VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG 
150
RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK 
200
KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT 
250
TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG
300