Locus |
Common name |
Short description |
AT3G12480 |
NF-YC11 |
"nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) |
>AT3G12480.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
810 |
NcoI
| C|CATGG |
305 |
NdeI
| CA|TATG |
149 |
PstI
| CTGCA|G |
752 |
PvuII
| CAG|CTG |
29 |
SacI
| GAGCT|C |
186 |
StyI
| C|C[AT][AT]GG |
279, 305 |
Click here to view TAIR data
>AT3G12480.1 length:882
ATGAGGAAGA AGCTCGATAC TCGGTTCCCA GCTGCTCGTA TTAAAAAGAT | 50 |
TATGCAAGCT GATGAGGATG TTGGCAAGAT AGCTTTGGCA GTGCCTGTCT | 100 |
TAGTCTCAAA ATCTTTGGAG TTGTTCTTGC AAGACCTTTG TGATCGTACA | 150 |
TATGAAATTA CCCTTGAAAG AGGTGCCAAG ACTGTGAGCT CATTGCACCT | 200 |
AAAACATTGT GTGGAAAGAT ATAACGTGTT TGATTTTCTG AGGGAAGTTG | 250 |
TGAGTAAGGT GCCTGACTAT GGCCATTCCC AAGGGCAAGG ACATGGTGAT | 300 |
GTTACCATGG ATGATCGCAG CATCTCCAAG AGAAGGAAGC CCATCAGCGA | 350 |
TGAAGTGAAT GACAGTGACG AGGAATATAA GAAAAGCAAA ACGCAAGAGA | 400 |
TAGGGAGTGC TAAGACCAGT GGCAGGGGTG GTAGAGGAAG AGGGCGAGGA | 450 |
AGAGGTCGTG GTGGACGAGC TGCAAAAGCA GCCGAAAGAG AGGGTCTCAA | 500 |
CCGCGAGATG GAAGTAGAAG CCGCCAATTC TGGACAGCCA CCACCAGAAG | 550 |
ACAATGTCAA GATGCATGCG TCAGAGTCAT CACCACAAGA GGATGAGAAG | 600 |
AAAGGCATCG ACGGCACAGC AGCATCGAAC GAAGACACCA AGCAACACCT | 650 |
TCAAAGTCCC AAAGAAGGCA TTGACTTTGA TCTCAACGCT GAATCCCTCG | 700 |
ACCTAAACGA GACCAAACTG GCACCAGCCA CAGGCACAAC CACAACCACA | 750 |
ACTGCAGCAA CAGACTCTGA GGAGTATTCG GGCTGGCCTA TGATGGACAT | 800 |
AAGCAAAATG GATCCAGCAC AGCTTGCTAG TCTGGGTAAG AGGATAGACG | 850 |
AGGATGAGGA AGATTATGAC GAAGAAGGCT AA | 900 |
>AT3G12480.1 longest ORF length:293
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT | 50 |
YEITLERGAK TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHSQGQGHGD | 100 |
VTMDDRSISK RRKPISDEVN DSDEEYKKSK TQEIGSAKTS GRGGRGRGRG | 150 |
RGRGGRAAKA AEREGLNREM EVEAANSGQP PPEDNVKMHA SESSPQEDEK | 200 |
KGIDGTAASN EDTKQHLQSP KEGIDFDLNA ESLDLNETKL APATGTTTTT | 250 |
TAATDSEEYS GWPMMDISKM DPAQLASLGK RIDEDEEDYD EEG | 300 |
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