fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G12730 Homeodomain-like superfamily protein (.1)

>AT3G12730.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 574, 608
SpeI A|CTAGT 334
StyI C|C[AT][AT]GG 126, 574, 608


Click here to view TAIR data

>AT3G12730.1 length:708
ATGATGCAGT CGAGAGAGGA GATCAGAGAT GATTCATCAT CAGGTCTCGT 
50
CCTCACCACT GACCCTAAGC CTCGCCTTCG CTGGACCACA GAGCTTCACG 
100
AACGCTTCGT TGACGCCGTC ACTCACCTTG GAGGCCCTGA AAAGGCTACA 
150
CCAAAGACAA TAATGAGAGT TATGGGTGTG AAGGGTCTCA CTCTTTATCA 
200
TCTCAAGAGC CATCTCCAGA AGTTCAGACT TGGGAAGCAG CCTCACAAGG 
250
AGCATAGTCA AAATCACTCC ATTTGTATTA GAGATACAAA TAGAGCTTCC 
300
ATGTTGGATC TTCGAAGGAA TGCTGTTTTC ACGACTAGTC CGCTCATCAT 
350
TGGTCGCAAT ATGAACGAGA TGCAAATGGA GGTGCAAAGA AGGATAGAGG 
400
AAGAGGTAGT AATAGAAAGA CAGGTGAATC AAAGGATAGC GGCACAAGGG 
450
AAATACATGG AGAGCATGTT AGAGAAAGCA TGTGAAACCC AAGAAGCAAG 
500
CCTCACTAAA GACTACTCTA CTCTATTTTT CGACCGCACC AATATTTGTA 
550
ACAACACATC GTCCATCCCA ATCCCATGGT TCGAGGATCA TTTTCCTTCC 
600
TCTTCCTCCA TGGACTCTAC GTTGATTCTC CCCGACATCA ATTCCAACTT 
650
CTCCCTACAA GATTCTAGGA GTTCCATCAC TAAGGGCCGT ACGGTTTGTC 
700
TCGGTTAG
750

>AT3G12730.1 longest ORF length:235
MMQSREEIRD DSSSGLVLTT DPKPRLRWTT ELHERFVDAV THLGGPEKAT 
50
PKTIMRVMGV KGLTLYHLKS HLQKFRLGKQ PHKEHSQNHS ICIRDTNRAS 
100
MLDLRRNAVF TTSPLIIGRN MNEMQMEVQR RIEEEVVIER QVNQRIAAQG 
150
KYMESMLEKA CETQEASLTK DYSTLFFDRT NICNNTSSIP IPWFEDHFPS 
200
SSSMDSTLIL PDINSNFSLQ DSRSSITKGR TVCLG
250