fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G13350 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)

>AT3G13350.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
NcoI C|CATGG 626, 780
PvuII CAG|CTG 373
SalI G|TCGAC 3
StyI C|C[AT][AT]GG 626, 780
XhoI C|TCGAG 245


Click here to view TAIR data

>AT3G13350.1 length:960
ATGTCGACCG ATATTTCACC ACCCTACTCT CAAACTCACG TGGAGCCCGT 
50
TAATGGTTAT CCTTCTGACA ACAAGAGATG CGACGATTCC TCTGTTCCTG 
100
CCAAATATGA TGATCTTGTC CGTAACTCTG CTCTCTTCTG GGAAAAGCTC 
150
CGAGCTTTCC TCGGATTAAC CAGCAAGACT TTGAAGGTTC CTACTGTGGG 
200
AGGAAACACT CTTGATCTGC ATCGGCTTTT CATCGAGGTT ACGTCTCGAG 
250
GTGGTATCGA AAGGGTGGTG AAGGATCGGA AATGGAAAGA AGTGATTGGT 
300
GCATTCAGTT TTCCGACAAC GATAACAAGT GCATCGTTTG TCTTGAGGAA 
350
GTATTATCTC AAGTTTCTTT TTCAGCTGGA ACATGTGTAT TACCTTGAAA 
400
AACCGGTGTC TTCACTCCAA TCAACAGATG AAGCATTGAA GAGCCTTGCC 
450
AATGAATCTC CAAACCCTGA GGAAGGTATT GATGAACCAC AAGTTGGGTA 
500
TGAGGTTCAA GGATTCATTG ATGGGAAGTT TGATAGCGGC TATCTGGTGA 
550
CGATGAAATT GGGTTCTCAA GAGCTGAAAG GTGTCCTTTA CCACATTCCT 
600
CAAACGCCAA GTCAGTCTCA ACAAACCATG GAAACACCTT CAGCCATTGT 
650
ACAATCATCA CAACGCCGGC ATAGGAAGAA ATCAAAGTTG GCTGTAGTCG 
700
ATACTCAAAA ACCCAAATGC CACAGGAGTG GCTACAACTT CTTTTTTGCT 
750
GAGCAGTACG CGAGGCTTAA ACCTGAGTAC CATGGACAAG AACGATCCAT 
800
CACTAAGAAA ATAGGACACA TGTGGAGCAA TCTCACTGAA TCTGAGAAAC 
850
AGGTTTATCA AGACAAAGGA GTTAAGGATG TGGAGAGATA CAGAATTGAG 
900
ATGTTGGAAT ATAAGTCTTC ACATGAATCA GGAGCTACTG CTTCTACAGT 
950
GGCTCAGTAG 
1000

>AT3G13350.1 longest ORF length:319
MSTDISPPYS QTHVEPVNGY PSDNKRCDDS SVPAKYDDLV RNSALFWEKL 
50
RAFLGLTSKT LKVPTVGGNT LDLHRLFIEV TSRGGIERVV KDRKWKEVIG 
100
AFSFPTTITS ASFVLRKYYL KFLFQLEHVY YLEKPVSSLQ STDEALKSLA 
150
NESPNPEEGI DEPQVGYEVQ GFIDGKFDSG YLVTMKLGSQ ELKGVLYHIP 
200
QTPSQSQQTM ETPSAIVQSS QRRHRKKSKL AVVDTQKPKC HRSGYNFFFA 
250
EQYARLKPEY HGQERSITKK IGHMWSNLTE SEKQVYQDKG VKDVERYRIE 
300
MLEYKSSHES GATASTVAQ
350