fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G13540 ATMYB5, ATM2 myb domain protein 5 (.1)

>AT3G13540.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 258
NcoI C|CATGG 79
StyI C|C[AT][AT]GG 79
XbaI T|CTAGA 477


Click here to view TAIR data

>AT3G13540.1 length:750
ATGATGTCAT GTGGTGGGAA GAAGCCAGTG TCTAAGAAAA CAACGCCGTG 
50
TTGCACGAAG ATGGGGATGA AGAGAGGACC ATGGACGGTG GAGGAAGACG 
100
AGATTCTTGT GAGCTTCATT AAGAAAGAAG GTGAAGGACG GTGGCGATCG 
150
CTTCCTAAGA GAGCTGGTTT ACTCAGATGT GGAAAGAGCT GTCGTCTACG 
200
GTGGATGAAC TATCTCCGAC CCTCGGTTAA ACGTGGAGGA ATTACGTCGG 
250
ACGAGGAAGA TCTCATCCTC CGTCTTCACC GCCTCCTCGG CAACAGGTGG 
300
TCATTGATCG CGGGAAGGAT ACCGGGAAGG ACTGATAATG AAATTAAGAA 
350
CTATTGGAAC ACTCATCTTC GTAAGAAACT TTTAAGGCAA GGAATTGATC 
400
CTCAAACCCA CAAGCCTCTT GATGCAAACA ACATCCATAA ACCAGAAGAA 
450
GAAGTTTCCG GTGGACAAAA GTACCCTCTA GAGCCTATTT CTAGTTCTCA 
500
TACTGATGAT ACCACTGTTA ATGGCGGGGA TGGAGATAGC AAGAACAGTA 
550
TCAATGTCTT TGGTGGTGAA CACGGCTACG AAGACTTTGG TTTCTGCTAC 
600
GACGACAAGT TCTCATCGTT TCTTAATTCG CTCATCAACG ATGTTGGTGA 
650
TCCTTTTGGT AATATTATCC CAATATCTCA ACCTTTGCAG ATGGATGATT 
700
GTAAGGATGG GATTGTTGGA GCGTCGTCTT CTAGCTTAGG ACATGACTAG 
750

>AT3G13540.1 longest ORF length:249
MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS 
50
LPKRAGLLRC GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW 
100
SLIAGRIPGR TDNEIKNYWN THLRKKLLRQ GIDPQTHKPL DANNIHKPEE 
150
EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE HGYEDFGFCY 
200
DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
250