|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT3G13890 | ATMYB26, MS35 | MALE STERILE 35, myb domain protein 26 (.1.2) |
>AT3G13890.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HpaII, HphI, Hpy188I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SapI, Sau96I, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TspRI, Tth111I, XcmI, XmaI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 475 |
| AflIII | A|CPuPyGT | 848 |
| AhdI | GACNNN|NNGTC | 687, 1090 |
| AluI | AG|CT | 69, 110, 230, 247, 264, 369 |
| ApoI | Pu|AATTPy | 342 |
| AvaI | C|PyCGPuG | 354 |
| BalI | TGG|CCA | 96, 763 |
| BanII | GPuGCPy|C | 111, 293 |
| BclI | T|GATCA | 999, 1043 |
| BfaI | C|TAG | 597 |
| BsaAI | PyAC|GTPu | 969 |
| BsaBI | GATNN|NNATC | 752 |
| BsaJI | C|CNNGG | 99, 419 |
| BsiHKAI | G[AT]GC[AT]|C | 111 |
| BsoBI | C|PyCGPuG | 354 |
| Bsp1286I | G[GAT]GC[CAT]|C | 111, 293 |
| BspHI | T|CATGA | 744 |
| BssKI | |CCNGG | 315 |
| BstEII | G|GTNACC | 51 |
| BstF5I | GGATGNN| | 104 |
| BstNI | CC|[AT]GG | 315 |
| BtgI | C|CPuPyGG | 99, 419 |
| Cac8I | GCN|NGC | 130, 765 |
| DdeI | C|TNAG | 207 |
| DpnI | GA-CH3|TC | 215, 944, 998, 1042 |
| DpnII | |GATC | 215, 944, 998, 1042 |
| EaeI | Py|GGCCPu | 96, 763 |
| Fnu4HI | GC|NGC | 16, 249 |
| HaeIII | GG|CC | 95, 762, 950 |
| HincII | GTPy|PuAC | 475 |
| HindIII | A|AGCTT | 231 |
| HinfI | G|ANTC | 457, 493, 1023 |
| Hpy99I | CG[AT]CG| | 476, 1066 |
| HpyCH4III | ACN|GT | 391, 471, 1085 |
| HpyCH4IV | A|CGT | 223, 846, 968, 1089 |
| HpyCH4V | TG|CA | 17, 127, 162 |
| MboI | |GATC | 215, 944, 998, 1042 |
| MscI | TGG|CCA | 96, 763 |
| MseI | T|TAA | 188, 219, 360, 1099 |
| MslI | CAPyNN|NNPuTG | 149, 653 |
| MwoI | GCNNNNN|NNGC | 300 |
| NcoI | C|CATGG | 99, 419 |
| NdeI | CA|TATG | 92 |
| NlaIII | CATG| | 12, 98, 125, 149, 373, 418, 496, 566, 653, 743, 1039 |
| NspI | PuCATG|Py | 126 |
| PaeR7I | C|TCGAG | 354 |
| PspGI | |CC[AT]GG | 315 |
| RsaI | GT|AC | 789, 914, 970, 1087 |
| SacI | GAGCT|C | 111 |
| SalI | G|TCGAC | 475 |
| Sau3AI | |GATC | 215, 944, 998, 1042 |
| ScaI | AGT|ACT | 915 |
| ScrFI | CC|NGG | 315 |
| SfcI | C|TPuPyAG | 470 |
| SmlI | C|TPyPuAG | 242, 354 |
| StyI | C|C[AT][AT]GG | 99, 419 |
| Taqƒ¿I | T|CGA | 353, 474, 678, 903, 1015 |
| TfiI | G|A[AT]TC | 457, 493 |
| TliI | C|TCGAG | 354 |
| TseI | G|C[AT]GC | 16, 249 |
| Tsp45I | |GT[CG]AC | 50, 689, 855 |
| Tsp509I | |AATT | 86, 200, 298, 341, 527, 934 |
| XbaI | T|CTAGA | 598 |
| XhoI | C|TCGAG | 354 |
| XmnI | GAANN|NNTTC | 815 |
Click here to view TAIR data
>AT3G13890.1 length:1104
ATGGGTCATC ACTCATGCTG CAACAAGCAA AAGGTGAAGA GAGGGCTTTG | 50 |
GTCACCTGAA GAAGACGAAA AGCTCATCAA CTACATCAAT TCATATGGCC | 100 |
ATGGATGTTG GAGCTCTGTT CCTAAACATG CAGGCACTTA TACACATATA | 150 |
CATGGGTTTT GTTTGCAGAG ATGTGGAAAG AGTTGTAGAT TAAGATGGAT | 200 |
AAATTATCTA AGACCTGATC TTAAACGTGG AAGCTTCTCT CCTCAAGAAG | 250 |
CTGCTCTTAT CATTGAGCTT CACAGCATTC TTGGTAACAG ATGGGCTCAA | 300 |
ATTGCTAAAC ATCTACCTGG AAGAACAGAT AACGAGGTCA AGAATTTCTG | 350 |
GAACTCGAGC ATTAAAAAGA AGCTCATGTC TCACCATCAT CACGGTCATC | 400 |
ATCATCATCA TCTCTCTTCC ATGGCGAGTT TGCTCACAAA CCTTCCTTAT | 450 |
CACAATGGAT TCAACCCTAC TACAGTCGAC GATGAAAGTT CAAGATTCAT | 500 |
GTCCAATATC ATCACAAACA CTAACCCTAA TTTCATCACT CCAAGCCATC | 550 |
TCTCTCTTCC TTCTCCTCAT GTTATGACCC CATTGATGTT CCCAACCTCT | 600 |
AGAGAAGGAG ATTTCAAGTT TCTAACCACA AACAACCCAA ACCAATCTCA | 650 |
TCACCATGAT AATAACCATT ACAACAACCT CGACATTTTG TCACCCACAC | 700 |
CAACTATAAA CAATCATCAT CAACCTTCAC TTTCTTCTTG TCCTCATGAT | 750 |
AATAATCTCC AATGGCCAGC GTTACCAGAT TTCCCAGCGA GTACCATTTC | 800 |
TGGTTTCCAA GAAACCCTTC AAGATTATGA TGATGCTAAT AAACTCAACG | 850 |
TGTTTGTGAC ACCATTCAAC GATAATGCCA AAAAGTTATT ATGTGGAGAA | 900 |
GTTCTCGAAG GCAAAGTACT ATCTTCCTCC TCACCAATTT CACAAGATCA | 950 |
CGGCCTTTTT CTTCCCACCA CGTACAACTT TCAAATGACT TCTACGAGTG | 1000 |
ATCATCAACA TCATCATCGA GTGGACTCAT ACATCAATCA CATGATCATA | 1050 |
CCATCATCAT CCTCATCGTC GCCAATCTCT TGTGGACAGT ACGTCATAAC | 1100 |
TTAA | 1150 |
>AT3G13890.1 longest ORF length:367
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGTYTHI | 50 |
HGFCLQRCGK SCRLRWINYL RPDLKRGSFS PQEAALIIEL HSILGNRWAQ | 100 |
IAKHLPGRTD NEVKNFWNSS IKKKLMSHHH HGHHHHHLSS MASLLTNLPY | 150 |
HNGFNPTTVD DESSRFMSNI ITNTNPNFIT PSHLSLPSPH VMTPLMFPTS | 200 |
REGDFKFLTT NNPNQSHHHD NNHYNNLDIL SPTPTINNHH QPSLSSCPHD | 250 |
NNLQWPALPD FPASTISGFQ ETLQDYDDAN KLNVFVTPFN DNAKKLLCGE | 300 |
VLEGKVLSSS SPISQDHGLF LPTTYNFQMT STSDHQHHHR VDSYINHMII | 350 |
PSSSSSSPIS CGQYVIT | 400 |