|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT3G13890 | ATMYB26, MS35 | MALE STERILE 35, myb domain protein 26 (.1.2) |
>AT3G13890.2 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HpaII, HphI, Hpy188I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SapI, Sau96I, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TspRI, Tth111I, XcmI, XmaI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 448 |
| AflIII | A|CPuPyGT | 821 |
| AhdI | GACNNN|NNGTC | 660, 1063 |
| AluI | AG|CT | 69, 110, 203, 220, 237, 342 |
| ApoI | Pu|AATTPy | 315 |
| AvaI | C|PyCGPuG | 327 |
| BalI | TGG|CCA | 96, 736 |
| BanII | GPuGCPy|C | 111, 266 |
| BclI | T|GATCA | 972, 1016 |
| BfaI | C|TAG | 570 |
| BsaAI | PyAC|GTPu | 942 |
| BsaBI | GATNN|NNATC | 725 |
| BsaJI | C|CNNGG | 99, 392 |
| BsiHKAI | G[AT]GC[AT]|C | 111 |
| BsoBI | C|PyCGPuG | 327 |
| Bsp1286I | G[GAT]GC[CAT]|C | 111, 266 |
| BspHI | T|CATGA | 717 |
| BssKI | |CCNGG | 288 |
| BstEII | G|GTNACC | 51 |
| BstF5I | GGATGNN| | 104 |
| BstNI | CC|[AT]GG | 288 |
| BtgI | C|CPuPyGG | 99, 392 |
| Cac8I | GCN|NGC | 738 |
| DdeI | C|TNAG | 180 |
| DpnI | GA-CH3|TC | 188, 917, 971, 1015 |
| DpnII | |GATC | 188, 917, 971, 1015 |
| EaeI | Py|GGCCPu | 96, 736 |
| Fnu4HI | GC|NGC | 16, 222 |
| HaeIII | GG|CC | 95, 735, 923 |
| HincII | GTPy|PuAC | 448 |
| HindIII | A|AGCTT | 204 |
| HinfI | G|ANTC | 430, 466, 996 |
| Hpy99I | CG[AT]CG| | 449, 1039 |
| HpyCH4III | ACN|GT | 364, 444, 1058 |
| HpyCH4IV | A|CGT | 196, 819, 941, 1062 |
| HpyCH4V | TG|CA | 17, 127, 135 |
| MboI | |GATC | 188, 917, 971, 1015 |
| MscI | TGG|CCA | 96, 736 |
| MseI | T|TAA | 161, 192, 333, 1072 |
| MslI | CAPyNN|NNPuTG | 626 |
| MwoI | GCNNNNN|NNGC | 273 |
| NcoI | C|CATGG | 99, 392 |
| NdeI | CA|TATG | 92 |
| NlaIII | CATG| | 12, 98, 125, 346, 391, 469, 539, 626, 716, 1012 |
| NspI | PuCATG|Py | 126 |
| PaeR7I | C|TCGAG | 327 |
| PspGI | |CC[AT]GG | 288 |
| RsaI | GT|AC | 762, 887, 943, 1060 |
| SacI | GAGCT|C | 111 |
| SalI | G|TCGAC | 448 |
| Sau3AI | |GATC | 188, 917, 971, 1015 |
| ScaI | AGT|ACT | 888 |
| ScrFI | CC|NGG | 288 |
| SfcI | C|TPuPyAG | 443 |
| SmlI | C|TPyPuAG | 215, 327 |
| StyI | C|C[AT][AT]GG | 99, 392 |
| Taqƒ¿I | T|CGA | 326, 447, 651, 876, 988 |
| TfiI | G|A[AT]TC | 430, 466 |
| TliI | C|TCGAG | 327 |
| TseI | G|C[AT]GC | 16, 222 |
| Tsp45I | |GT[CG]AC | 50, 662, 828 |
| Tsp509I | |AATT | 86, 173, 271, 314, 500, 907 |
| XbaI | T|CTAGA | 571 |
| XhoI | C|TCGAG | 327 |
| XmnI | GAANN|NNTTC | 788 |
Click here to view TAIR data
>AT3G13890.2 length:1077
ATGGGTCATC ACTCATGCTG CAACAAGCAA AAGGTGAAGA GAGGGCTTTG | 50 |
GTCACCTGAA GAAGACGAAA AGCTCATCAA CTACATCAAT TCATATGGCC | 100 |
ATGGATGTTG GAGCTCTGTT CCTAAACATG CAGGTTTGCA GAGATGTGGA | 150 |
AAGAGTTGTA GATTAAGATG GATAAATTAT CTAAGACCTG ATCTTAAACG | 200 |
TGGAAGCTTC TCTCCTCAAG AAGCTGCTCT TATCATTGAG CTTCACAGCA | 250 |
TTCTTGGTAA CAGATGGGCT CAAATTGCTA AACATCTACC TGGAAGAACA | 300 |
GATAACGAGG TCAAGAATTT CTGGAACTCG AGCATTAAAA AGAAGCTCAT | 350 |
GTCTCACCAT CATCACGGTC ATCATCATCA TCATCTCTCT TCCATGGCGA | 400 |
GTTTGCTCAC AAACCTTCCT TATCACAATG GATTCAACCC TACTACAGTC | 450 |
GACGATGAAA GTTCAAGATT CATGTCCAAT ATCATCACAA ACACTAACCC | 500 |
TAATTTCATC ACTCCAAGCC ATCTCTCTCT TCCTTCTCCT CATGTTATGA | 550 |
CCCCATTGAT GTTCCCAACC TCTAGAGAAG GAGATTTCAA GTTTCTAACC | 600 |
ACAAACAACC CAAACCAATC TCATCACCAT GATAATAACC ATTACAACAA | 650 |
CCTCGACATT TTGTCACCCA CACCAACTAT AAACAATCAT CATCAACCTT | 700 |
CACTTTCTTC TTGTCCTCAT GATAATAATC TCCAATGGCC AGCGTTACCA | 750 |
GATTTCCCAG CGAGTACCAT TTCTGGTTTC CAAGAAACCC TTCAAGATTA | 800 |
TGATGATGCT AATAAACTCA ACGTGTTTGT GACACCATTC AACGATAATG | 850 |
CCAAAAAGTT ATTATGTGGA GAAGTTCTCG AAGGCAAAGT ACTATCTTCC | 900 |
TCCTCACCAA TTTCACAAGA TCACGGCCTT TTTCTTCCCA CCACGTACAA | 950 |
CTTTCAAATG ACTTCTACGA GTGATCATCA ACATCATCAT CGAGTGGACT | 1000 |
CATACATCAA TCACATGATC ATACCATCAT CATCCTCATC GTCGCCAATC | 1050 |
TCTTGTGGAC AGTACGTCAT AACTTAA | 1100 |
>AT3G13890.2 longest ORF length:358
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGLQRCG | 50 |
KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT | 100 |
DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV | 150 |
DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT | 200 |
TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP | 250 |
DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS | 300 |
SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI | 350 |
SCGQYVIT | 400 |