fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G13890 ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2)

>AT3G13890.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI
Name Recognition sequence Cut positions
HindIII A|AGCTT 204
NcoI C|CATGG 99, 392
NdeI CA|TATG 92
SacI GAGCT|C 111
SalI G|TCGAC 448
StyI C|C[AT][AT]GG 99, 392
XbaI T|CTAGA 571
XhoI C|TCGAG 327


Click here to view TAIR data

>AT3G13890.2 length:1077
ATGGGTCATC ACTCATGCTG CAACAAGCAA AAGGTGAAGA GAGGGCTTTG 
50
GTCACCTGAA GAAGACGAAA AGCTCATCAA CTACATCAAT TCATATGGCC 
100
ATGGATGTTG GAGCTCTGTT CCTAAACATG CAGGTTTGCA GAGATGTGGA 
150
AAGAGTTGTA GATTAAGATG GATAAATTAT CTAAGACCTG ATCTTAAACG 
200
TGGAAGCTTC TCTCCTCAAG AAGCTGCTCT TATCATTGAG CTTCACAGCA 
250
TTCTTGGTAA CAGATGGGCT CAAATTGCTA AACATCTACC TGGAAGAACA 
300
GATAACGAGG TCAAGAATTT CTGGAACTCG AGCATTAAAA AGAAGCTCAT 
350
GTCTCACCAT CATCACGGTC ATCATCATCA TCATCTCTCT TCCATGGCGA 
400
GTTTGCTCAC AAACCTTCCT TATCACAATG GATTCAACCC TACTACAGTC 
450
GACGATGAAA GTTCAAGATT CATGTCCAAT ATCATCACAA ACACTAACCC 
500
TAATTTCATC ACTCCAAGCC ATCTCTCTCT TCCTTCTCCT CATGTTATGA 
550
CCCCATTGAT GTTCCCAACC TCTAGAGAAG GAGATTTCAA GTTTCTAACC 
600
ACAAACAACC CAAACCAATC TCATCACCAT GATAATAACC ATTACAACAA 
650
CCTCGACATT TTGTCACCCA CACCAACTAT AAACAATCAT CATCAACCTT 
700
CACTTTCTTC TTGTCCTCAT GATAATAATC TCCAATGGCC AGCGTTACCA 
750
GATTTCCCAG CGAGTACCAT TTCTGGTTTC CAAGAAACCC TTCAAGATTA 
800
TGATGATGCT AATAAACTCA ACGTGTTTGT GACACCATTC AACGATAATG 
850
CCAAAAAGTT ATTATGTGGA GAAGTTCTCG AAGGCAAAGT ACTATCTTCC 
900
TCCTCACCAA TTTCACAAGA TCACGGCCTT TTTCTTCCCA CCACGTACAA 
950
CTTTCAAATG ACTTCTACGA GTGATCATCA ACATCATCAT CGAGTGGACT 
1000
CATACATCAA TCACATGATC ATACCATCAT CATCCTCATC GTCGCCAATC 
1050
TCTTGTGGAC AGTACGTCAT AACTTAA
1100

>AT3G13890.2 longest ORF length:358
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGLQRCG 
50
KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT 
100
DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV 
150
DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT 
200
TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP 
250
DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS 
300
SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI 
350
SCGQYVIT
400