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| Locus | Common name | Short description |
| AT3G15170 | ATNAC1, CUC1, ANAC054 | CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) |
>AT3G15170.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AciI | C|CGC | 147, 474, 699, 707, 900 |
| AflIII | A|CPuPyGT | 638 |
| AluI | AG|CT | 93, 189, 289, 332, 391, 680 |
| AlwNI | CAGNNN|CTG | 290, 769 |
| ApoI | Pu|AATTPy | 448 |
| AvaI | C|PyCGPuG | 355 |
| BanII | GPuGCPy|C | 392 |
| BclI | T|GATCA | 98 |
| BglI | GCCNNNN|NGGC | 442 |
| BsaAI | PyAC|GTPu | 637 |
| BsaJI | C|CNNGG | 64, 184, 851 |
| BsaWI | [AT]|CCGG[AT] | 574 |
| BsiHKAI | G[AT]GC[AT]|C | 392, 634 |
| BslI | CCNNNNN|NNGG | 119 |
| BsoBI | C|PyCGPuG | 355 |
| Bsp1286I | G[GAT]GC[CAT]|C | 392, 634 |
| BsrDI | GCAATGNN| | 882 |
| BsrFI | Pu|CCGGPy | 592 |
| BsrI | ACTGGN| | 299, 310 |
| BssKI | |CCNGG | 63 |
| BstF5I | GGATGNN| | 4, 360, 484 |
| BstNI | CC|[AT]GG | 63 |
| BtgI | C|CPuPyGG | 851 |
| BtrI | CAC|GTC | 725, 734 |
| Cac8I | GCN|NGC | 679 |
| Cfr10I | [AG]|CCGG[TC] | 592 |
| DdeI | C|TNAG | 178, 196, 240, 267, 478 |
| DpnI | GA-CH3|TC | 97, 164, 325, 544, 610, 780 |
| DpnII | |GATC | 97, 164, 325, 544, 610, 780 |
| EaeI | Py|GGCCPu | 916 |
| EcoNI | CCTNN|NNNAGG | 119 |
| Fnu4HI | GC|NGC | 147, 517, 663, 807, 813 |
| HaeIII | GG|CC | 30, 915 |
| HinfI | G|ANTC | 48, 129, 830 |
| HpaII | C|CGG | 573, 591 |
| Hpy188I | TCN|GA | 177, 509, 608, 827, 928 |
| Hpy99I | CG[AT]CG| | 628, 740 |
| HpyCH4III | ACN|GT | 19, 247, 852, 886 |
| HpyCH4IV | A|CGT | 636, 724, 733, 738 |
| HpyCH4V | TG|CA | 423, 598, 805, 877 |
| MboI | |GATC | 97, 164, 325, 544, 610, 780 |
| MfeI | C|AATTG | 602 |
| MseI | T|TAA | 15 |
| MslI | CAPyNN|NNPuTG | 674, 743 |
| MspI | C|CGG | 573, 591 |
| MwoI | GCNNNNN|NNGC | 188, 288, 442, 597, 716, 813 |
| NlaIII | CATG| | 421, 425 |
| NlaIV | GGN|NCC | 895 |
| NsiI | ATGCA|T | 424 |
| PmlI | CAC|GTG | 637 |
| PspGI | |CC[AT]GG | 63 |
| RsaI | GT|AC | 226, 883 |
| SacI | GAGCT|C | 392 |
| Sau3AI | |GATC | 97, 164, 325, 544, 610, 780 |
| ScrFI | CC|NGG | 63 |
| SmlI | C|TPyPuAG | 115, 158 |
| StyI | C|C[AT][AT]GG | 184 |
| Taqƒ¿I | T|CGA | 801 |
| TfiI | G|A[AT]TC | 48, 830 |
| TseI | G|C[AT]GC | 663, 807, 813 |
| Tsp45I | |GT[CG]AC | 570, 713, 736 |
| Tsp509I | |AATT | 134, 447, 601 |
| TspRI | NNCA[CG]TGNN| | 310, 717 |
| XmnI | GAANN|NNTTC | 491 |
Click here to view TAIR data
>AT3G15170.1 length:933
ATGGATGTTG ATGTGTTTAA CGGTTGGGGG AGGCCAAGAT TTGAAGATGA | 50 |
ATCCCTTATG CCACCTGGGT TTAGGTTTCA TCCAACTGAT GAAGAGCTGA | 100 |
TCACTTACTA TCTCCTCAAG AAGGTTCTTG ACTCTAATTT CTCTTGTGCC | 150 |
GCCATTTCTC AAGTTGATCT CAACAAGTCT GAGCCTTGGG AGCTTCCTGA | 200 |
GAAAGCGAAA ATGGGGGAGA AGGAGTGGTA CTTCTTCACA CTAAGAGACC | 250 |
GTAAATACCC AACGGGACTG AGAACGAACA GAGCAACAGA AGCTGGTTAC | 300 |
TGGAAAGCCA CTGGTAAAGA CAGAGAGATC AAAAGCTCAA AGACAAAATC | 350 |
ACTTCTCGGG ATGAAGAAAA CTCTTGTCTT TTACAAAGGC AGAGCTCCTA | 400 |
AAGGAGAGAA GAGTTGTTGG GTCATGCATG AGTATCGCCT TGACGGCAAA | 450 |
TTCTCTTACC ATTACATTTC CTCCTCCGCT AAGGATGAAT GGGTTCTCTG | 500 |
TAAAGTTTGT CTGAAAAGCG GCGTAGTTAG TAGAGAGACG AACTTGATCT | 550 |
CTTCTTCTTC TTCTTCTGCC GTCACCGGAG AGTTCTCCTC TGCCGGTTCT | 600 |
GCAATTGCTC CGATCATCAA TACCTTTGCG ACGGAGCACG TGTCCTGTTT | 650 |
CTCCAATAAC TCTGCTGCTC ATACCGATGC GAGCTTTCAT ACATTCCTTC | 700 |
CCGCTCCACC GCCGTCACTG CCCCCACGTC AGCCACGTCA CGTCGGTGAT | 750 |
GGCGTGGCGT TTGGTCAGTT TCTGGATTTG GGATCATCGG GACAGATTGA | 800 |
TTTCGATGCA GCAGCAGCAG CGTTCTTTCC GAATCTACCT TCTCTGCCTC | 850 |
CCACGGTTCT TCCTCCTCCT CCGTCATTTG CAATGTACGG TGGAGGCTCC | 900 |
CCCGCCGTGA GTGTGTGGCC GTTTACTCTC TGA | 950 |
>AT3G15170.1 longest ORF length:310
MDVDVFNGWG RPRFEDESLM PPGFRFHPTD EELITYYLLK KVLDSNFSCA | 50 |
AISQVDLNKS EPWELPEKAK MGEKEWYFFT LRDRKYPTGL RTNRATEAGY | 100 |
WKATGKDREI KSSKTKSLLG MKKTLVFYKG RAPKGEKSCW VMHEYRLDGK | 150 |
FSYHYISSSA KDEWVLCKVC LKSGVVSRET NLISSSSSSA VTGEFSSAGS | 200 |
AIAPIINTFA TEHVSCFSNN SAAHTDASFH TFLPAPPPSL PPRQPRHVGD | 250 |
GVAFGQFLDL GSSGQIDFDA AAAAFFPNLP SLPPTVLPPP PSFAMYGGGS | 300 |
PAVSVWPFTL | 350 |