Locus |
Common name |
Short description |
AT3G15500 |
ATNAC3, ANAC055 |
NAC domain containing protein 55, NAC domain containing protein 3 (.1) |
>AT3G15500.1 CDS map
>>Show genomic map

Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AflII, AflIII, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MwoI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TspRI, XbaI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AatII
| GACGT|C |
865 |
AccI
| GT|[AC][TG]AC |
558 |
AccII(FnuDII)
| CG|CG |
652 |
AciI
| C|CGC |
41, 105, 636 |
AclI
| AA|CGTT |
787 |
AgeI
| A|CCGGT |
292, 675 |
AhdI
| GACNNN|NNGTC |
530 |
AluI
| AG|CT |
12, 35, 75, 129, 136, 343, 367, 447, 505 |
ApoI
| Pu|AATTPy |
741 |
AvaI
| C|PyCGPuG |
222, 595, 918 |
AvaII
| G|G[AT]CC |
761 |
BfaI
| C|TAG |
930 |
BsaHI
| GPu|CGPyC |
865 |
BsaJI
| C|CNNGG |
166, 223, 716, 844 |
BsaWI
| [AT]|CCGG[AT] |
292, 675 |
BslI
| CCNNNNN|NNGG |
771, 903 |
BsoBI
| C|PyCGPuG |
222, 595, 918 |
BspDI
| AT|CGAT |
145 |
BsrFI
| Pu|CCGGPy |
109, 292, 640, 675 |
BssKI
| |CCNGG |
45, 268, 697, 715, 764, 896 |
BstNI
| CC|[AT]GG |
715 |
BstUI
| CG|CG |
652 |
BtgI
| C|CPuPyGG |
166 |
Cfr10I
| [AG]|CCGG[TC] |
109, 292, 640, 675 |
ClaI
| AT|CGAT |
145 |
DdeI
| C|TNAG |
777, 832 |
DpnI
| GA-CH3|TC |
146, 161 |
DpnII
| |GATC |
146, 161 |
Fnu4HI
| GC|NGC |
105, 636, 656, 821 |
HhaI
| GCG|C |
492, 653 |
HinP1I
| G|CGC |
492, 653 |
HincII
| GTPy|PuAC |
558, 892, 901, 923 |
HindIII
| A|AGCTT |
344, 448, 506 |
HinfI
| G|ANTC |
597, 779, 839 |
HpaI
| GTT|AAC |
901 |
HpaII
| C|CGG |
44, 108, 267, 291, 639, 674, 696, 764, 896 |
Hpy188I
| TCN|GA |
62, 772, 791, 861 |
Hpy99I
| CG[AT]CG| |
313, 429, 556, 584 |
HpyCH4III
| ACN|GT |
409, 805, 811 |
HpyCH4IV
| A|CGT |
588, 786, 864 |
HpyCH4V
| TG|CA |
399, 603 |
MboI
| |GATC |
146, 161 |
MfeI
| C|AATTG |
31, 390 |
MseI
| T|TAA |
680, 849, 900 |
MspI
| C|CGG |
44, 108, 267, 291, 639, 674, 696, 764, 896 |
N.BstNBI
| GAGTCNNNN|N |
602, 784 |
NciI
| CC|[CG]GG |
45, 268, 697, 764, 896 |
NcoI
| C|CATGG |
166 |
NlaIII
| CATG| |
165, 401, 605 |
NlaIV
| GGN|NCC |
379, 720, 762 |
NsiI
| ATGCA|T |
400 |
PaeR7I
| C|TCGAG |
595 |
PflFI
| GACN|NNGTC |
779 |
PspGI
| |CC[AT]GG |
715 |
RsaI
| GT|AC |
294, 406, 913 |
SalI
| G|TCGAC |
558 |
Sau3AI
| |GATC |
146, 161 |
Sau96I
| G|GNCC |
761 |
ScrFI
| CC|NGG |
45, 268, 697, 715, 764, 896 |
SfcI
| C|TPuPyAG |
96 |
SmlI
| C|TPyPuAG |
595 |
StyI
| C|C[AT][AT]GG |
166 |
Taqƒ¿I
| T|CGA |
144, 311, 417, 430, 469, 557, 594 |
TfiI
| G|A[AT]TC |
839 |
TliI
| C|TCGAG |
595 |
TseI
| G|C[AT]GC |
656, 821 |
Tsp45I
| |GT[CG]AC |
112, 808 |
Tsp509I
| |AATT |
30, 389, 740 |
Tth111I
| GACN|NNGTC |
779 |
XcmI
| CCANNNNN|NNNNTGG |
733 |
XhoI
| C|TCGAG |
595 |
Click here to view TAIR data
>AT3G15500.1 length:954
ATGGGTCTCC AAGAGCTTGA CCCGTTAGCC CAATTGAGCT TACCGCCGGG | 50 |
TTTTCGGTTT TATCCGACTG ACGAAGAGCT GATGGTTGAA TATCTCTGTA | 100 |
GAAAAGCCGC CGGTCACGAC TTCTCTCTCC AGCTCATAGC TGAAATCGAT | 150 |
CTCTACAAGT TTGATCCATG GGTTTTACCA AGTAAGGCGT TATTCGGTGA | 200 |
AAAAGAATGG TATTTTTTCA GCCCGAGGGA TAGGAAGTAT CCAAACGGGT | 250 |
CAAGACCTAA TCGGGTTGCC GGGTCGGGTT ATTGGAAAGC CACCGGTACG | 300 |
GATAAAGTTA TCTCGACGGA GGGAAGAAGA GTTGGTATCA AGAAAGCTTT | 350 |
GGTGTTTTAC ATTGGAAAAG CTCCAAAAGG AACCAAAACC AATTGGATTA | 400 |
TGCATGAGTA CCGTCTCATC GAACCCTCTC GTCGAAATGG AAGCACCAAG | 450 |
CTTGATGATT GGGTTTTATG TCGAATATAC AAAAAGCAAA CAAGCGCACA | 500 |
AAAACAAGCT TACAATAATC TAATGACGAG TGGTCGTGAA TACAGCAACA | 550 |
ATGGTTCGTC GACATCTTCT TCGTCTCATC AATACGACGA CGTTCTCGAG | 600 |
TCGTTGCATG AGATTGACAA CAGAAGTTTG GGGTTTGCCG CCGGTTCATC | 650 |
AAACGCGCTG CCTCATAGTC ATAGACCGGT TTTAACCAAT CATAAAACCG | 700 |
GGTTTCAGGG TTTAGCCAGG GAGCCAAGTT TTGATTGGGC GAATTTGATT | 750 |
GGACAGAACT CGGTCCCGGA ACTCGGACTG AGTCATAACG TTCCGAGTAT | 800 |
TCGTTACGGT GACGGTGGAA CGCAGCAACA AACTGAGGGG ATTCCTCGGT | 850 |
TTAATAATAA CTCGGACGTC TCGGCTAATC AGGGTTTTAG TGTTGACCCG | 900 |
GTTAACGGAT TTGGGTACTC GGGTCAACAA TCTAGTGGGT TCGGGTTTAT | 950 |
TTGA | 1000 |
>AT3G15500.1 longest ORF length:317
MGLQELDPLA QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLQLIAEID | 50 |
LYKFDPWVLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT | 100 |
DKVISTEGRR VGIKKALVFY IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK | 150 |
LDDWVLCRIY KKQTSAQKQA YNNLMTSGRE YSNNGSSTSS SSHQYDDVLE | 200 |
SLHEIDNRSL GFAAGSSNAL PHSHRPVLTN HKTGFQGLAR EPSFDWANLI | 250 |
GQNSVPELGL SHNVPSIRYG DGGTQQQTEG IPRFNNNSDV SANQGFSVDP | 300 |
VNGFGYSGQQ SSGFGFI | 350 |
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