fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G15500 ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1)

>AT3G15500.1 CDS map

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Uncut enzymes: Acc65I, AccIII(BspMII), AfeI, AflII, AflIII, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MwoI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TspRI, XbaI, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 865
AccI GT|[AC][TG]AC 558
AccII(FnuDII) CG|CG 652
AciI C|CGC 41, 105, 636
AclI AA|CGTT 787
AgeI A|CCGGT 292, 675
AhdI GACNNN|NNGTC 530
AluI AG|CT 12, 35, 75, 129, 136, 343, 367, 447, 505
ApoI Pu|AATTPy 741
AvaI C|PyCGPuG 222, 595, 918
AvaII G|G[AT]CC 761
BfaI C|TAG 930
BsaHI GPu|CGPyC 865
BsaJI C|CNNGG 166, 223, 716, 844
BsaWI [AT]|CCGG[AT] 292, 675
BslI CCNNNNN|NNGG 771, 903
BsoBI C|PyCGPuG 222, 595, 918
BspDI AT|CGAT 145
BsrFI Pu|CCGGPy 109, 292, 640, 675
BssKI |CCNGG 45, 268, 697, 715, 764, 896
BstNI CC|[AT]GG 715
BstUI CG|CG 652
BtgI C|CPuPyGG 166
Cfr10I [AG]|CCGG[TC] 109, 292, 640, 675
ClaI AT|CGAT 145
DdeI C|TNAG 777, 832
DpnI GA-CH3|TC 146, 161
DpnII |GATC 146, 161
Fnu4HI GC|NGC 105, 636, 656, 821
HhaI GCG|C 492, 653
HinP1I G|CGC 492, 653
HincII GTPy|PuAC 558, 892, 901, 923
HindIII A|AGCTT 344, 448, 506
HinfI G|ANTC 597, 779, 839
HpaI GTT|AAC 901
HpaII C|CGG 44, 108, 267, 291, 639, 674, 696, 764, 896
Hpy188I TCN|GA 62, 772, 791, 861
Hpy99I CG[AT]CG| 313, 429, 556, 584
HpyCH4III ACN|GT 409, 805, 811
HpyCH4IV A|CGT 588, 786, 864
HpyCH4V TG|CA 399, 603
MboI |GATC 146, 161
MfeI C|AATTG 31, 390
MseI T|TAA 680, 849, 900
MspI C|CGG 44, 108, 267, 291, 639, 674, 696, 764, 896
N.BstNBI GAGTCNNNN|N 602, 784
NciI CC|[CG]GG 45, 268, 697, 764, 896
NcoI C|CATGG 166
NlaIII CATG| 165, 401, 605
NlaIV GGN|NCC 379, 720, 762
NsiI ATGCA|T 400
PaeR7I C|TCGAG 595
PflFI GACN|NNGTC 779
PspGI |CC[AT]GG 715
RsaI GT|AC 294, 406, 913
SalI G|TCGAC 558
Sau3AI |GATC 146, 161
Sau96I G|GNCC 761
ScrFI CC|NGG 45, 268, 697, 715, 764, 896
SfcI C|TPuPyAG 96
SmlI C|TPyPuAG 595
StyI C|C[AT][AT]GG 166
Taqƒ¿I T|CGA 144, 311, 417, 430, 469, 557, 594
TfiI G|A[AT]TC 839
TliI C|TCGAG 595
TseI G|C[AT]GC 656, 821
Tsp45I |GT[CG]AC 112, 808
Tsp509I |AATT 30, 389, 740
Tth111I GACN|NNGTC 779
XcmI CCANNNNN|NNNNTGG 733
XhoI C|TCGAG 595


Click here to view TAIR data

>AT3G15500.1 length:954
ATGGGTCTCC AAGAGCTTGA CCCGTTAGCC CAATTGAGCT TACCGCCGGG 
50
TTTTCGGTTT TATCCGACTG ACGAAGAGCT GATGGTTGAA TATCTCTGTA 
100
GAAAAGCCGC CGGTCACGAC TTCTCTCTCC AGCTCATAGC TGAAATCGAT 
150
CTCTACAAGT TTGATCCATG GGTTTTACCA AGTAAGGCGT TATTCGGTGA 
200
AAAAGAATGG TATTTTTTCA GCCCGAGGGA TAGGAAGTAT CCAAACGGGT 
250
CAAGACCTAA TCGGGTTGCC GGGTCGGGTT ATTGGAAAGC CACCGGTACG 
300
GATAAAGTTA TCTCGACGGA GGGAAGAAGA GTTGGTATCA AGAAAGCTTT 
350
GGTGTTTTAC ATTGGAAAAG CTCCAAAAGG AACCAAAACC AATTGGATTA 
400
TGCATGAGTA CCGTCTCATC GAACCCTCTC GTCGAAATGG AAGCACCAAG 
450
CTTGATGATT GGGTTTTATG TCGAATATAC AAAAAGCAAA CAAGCGCACA 
500
AAAACAAGCT TACAATAATC TAATGACGAG TGGTCGTGAA TACAGCAACA 
550
ATGGTTCGTC GACATCTTCT TCGTCTCATC AATACGACGA CGTTCTCGAG 
600
TCGTTGCATG AGATTGACAA CAGAAGTTTG GGGTTTGCCG CCGGTTCATC 
650
AAACGCGCTG CCTCATAGTC ATAGACCGGT TTTAACCAAT CATAAAACCG 
700
GGTTTCAGGG TTTAGCCAGG GAGCCAAGTT TTGATTGGGC GAATTTGATT 
750
GGACAGAACT CGGTCCCGGA ACTCGGACTG AGTCATAACG TTCCGAGTAT 
800
TCGTTACGGT GACGGTGGAA CGCAGCAACA AACTGAGGGG ATTCCTCGGT 
850
TTAATAATAA CTCGGACGTC TCGGCTAATC AGGGTTTTAG TGTTGACCCG 
900
GTTAACGGAT TTGGGTACTC GGGTCAACAA TCTAGTGGGT TCGGGTTTAT 
950
TTGA
1000

>AT3G15500.1 longest ORF length:317
MGLQELDPLA QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLQLIAEID 
50
LYKFDPWVLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT 
100
DKVISTEGRR VGIKKALVFY IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK 
150
LDDWVLCRIY KKQTSAQKQA YNNLMTSGRE YSNNGSSTSS SSHQYDDVLE 
200
SLHEIDNRSL GFAAGSSNAL PHSHRPVLTN HKTGFQGLAR EPSFDWANLI 
250
GQNSVPELGL SHNVPSIRYG DGGTQQQTEG IPRFNNNSDV SANQGFSVDP 
300
VNGFGYSGQQ SSGFGFI
350