Locus |
Common name |
Short description |
AT3G15510 |
ATNAC2, ANAC056, NARS1 |
NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) |
>AT3G15510.1 CDS map
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Uncut enzymes: Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstF5I, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, StuI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AatII
| GACGT|C |
808 |
AccI
| GT|[AC][TG]AC |
545 |
AciI
| C|CGC |
32, 186 |
AflIII
| A|CPuPyGT |
549, 971 |
AgeI
| A|CCGGT |
301, 315 |
AluI
| AG|CT |
84 |
AlwNI
| CAGNNN|CTG |
119 |
ApoI
| Pu|AATTPy |
166, 675, 691, 858 |
AvaII
| G|G[AT]CC |
24, 840 |
BanI
| G|GPyPuCC |
879 |
BclI
| T|GATCA |
761 |
BfaI
| C|TAG |
362 |
BglI
| GCCNNNN|NGGC |
887 |
BsaBI
| GATNN|NNATC |
566 |
BsaHI
| GPu|CGPyC |
808 |
BsaJI
| C|CNNGG |
175, 684 |
BsaWI
| [AT]|CCGG[AT] |
19, 62, 301, 315, 697 |
BsiEI
| CGPuPy|CG |
299 |
BsiHKAI
| G[AT]GC[AT]|C |
6 |
BslI
| CCNNNNN|NNGG |
344, 390 |
Bsp1286I
| G[GAT]GC[CAT]|C |
6 |
BspDI
| AT|CGAT |
580 |
BspHI
| T|CATGA |
570 |
BspT107I(HgiCI)
| G|G[TC][AG]CC |
879 |
BsrBI
| GAG|CGG |
272 |
BsrFI
| Pu|CCGGPy |
301, 315 |
BssKI
| |CCNGG |
54, 459, 684, 875, 1068 |
BstAPI
| GCANNNN|NTGC |
120 |
BstBI
| TT|CGAA |
966 |
BstEII
| G|GTNACC |
335 |
BstNI
| CC|[AT]GG |
54, 459, 684 |
BtgI
| C|CPuPyGG |
175 |
Cfr10I
| [AG]|CCGG[TC] |
301, 315 |
ClaI
| AT|CGAT |
580 |
DdeI
| C|TNAG |
492, 782 |
DpnI
| GA-CH3|TC |
155, 170, 236, 409, 566, 577, 666, 760, 788 |
DpnII
| |GATC |
155, 170, 236, 409, 566, 577, 666, 760, 788 |
DraI
| TTT|AAA |
819, 1074 |
EcoO109I
| PuG|GNCCPy |
841 |
Fnu4HI
| GC|NGC |
114, 273, 621 |
HaeIII
| GG|CC |
888 |
HincII
| GTPy|PuAC |
545 |
HinfI
| G|ANTC |
12, 520, 599, 780, 995 |
HpaII
| C|CGG |
18, 61, 300, 314, 696, 875, 1068 |
Hpy188I
| TCN|GA |
239, 327, 493, 720, 920, 1045 |
Hpy99I
| CG[AT]CG| |
77, 329, 746, 809, 832 |
HpyCH4III
| ACN|GT |
331, 373, 724, 929, 937 |
HpyCH4IV
| A|CGT |
807 |
HpyCH4V
| TG|CA |
414, 913, 1008 |
MboI
| |GATC |
155, 170, 236, 409, 566, 577, 666, 760, 788 |
MseI
| T|TAA |
396, 818, 1073, 1090 |
MslI
| CAPyNN|NNPuTG |
656 |
MspI
| C|CGG |
18, 61, 300, 314, 696, 875, 1068 |
MwoI
| GCNNNNN|NNGC |
120, 144, 887 |
NciI
| CC|[CG]GG |
875, 1068 |
NcoI
| C|CATGG |
175 |
NlaIII
| CATG| |
174, 412, 416, 548, 569, 757, 824, 970, 982 |
NlaIV
| GGN|NCC |
879 |
NsiI
| ATGCA|T |
415, 914 |
NspI
| PuCATG|Py |
549, 971 |
PciI
| A|CATGT |
549, 971 |
PflMI
| CCANNNN|NTGG |
344 |
PpuMI
| PuG|G[AT]CCPy |
841 |
PspGI
| |CC[AT]GG |
54, 459, 684 |
RsaI
| GT|AC |
217, 303, 317, 774, 1057, 1081 |
SalI
| G|TCGAC |
545 |
Sau3AI
| |GATC |
155, 170, 236, 409, 566, 577, 666, 760, 788 |
Sau96I
| G|GNCC |
24, 840 |
ScrFI
| CC|NGG |
54, 459, 684, 875, 1068 |
SfcI
| C|TPuPyAG |
372, 632, 893 |
SmlI
| C|TPyPuAG |
663 |
SpeI
| A|CTAGT |
363 |
SspI
| AAT|ATT |
769 |
StyI
| C|C[AT][AT]GG |
175 |
Taqƒ¿I
| T|CGA |
153, 432, 451, 544, 579, 965 |
TfiI
| G|A[AT]TC |
12, 520, 599 |
TseI
| G|C[AT]GC |
114, 624 |
Tsp509I
| |AATT |
165, 674, 690, 857, 1062, 1076 |
TspRI
| NNCA[CG]TGNN| |
376 |
XmnI
| GAANN|NNTTC |
679 |
Click here to view TAIR data
>AT3G15510.1 length:1095
ATGGAGAGCA CCGATTCTTC CGGTGGTCCA CCACCGCCAC AACCTAACCT | 50 |
TCCTCCAGGC TTCCGGTTTC ACCCTACCGA CGAAGAGCTT GTTGTTCACT | 100 |
ACCTCAAACG CAAAGCAGCC TCTGCTCCTT TACCTGTCGC CATCATCGCC | 150 |
GAAGTCGATC TCTATAAATT TGATCCATGG GAACTTCCCG CTAAAGCATC | 200 |
GTTTGGAGAA CAAGAATGGT ACTTCTTTAG TCCACGAGAT CGGAAGTATC | 250 |
CAAACGGAGC AAGACCAAAC AGAGCGGCGA CTTCAGGTTA TTGGAAAGCG | 300 |
ACCGGTACAG ATAAACCGGT ACTTGCTTCC GACGGTAACC AAAAGGTGGG | 350 |
CGTGAAGAAG GCACTAGTCT TCTACAGTGG TAAACCACCA AAAGGCGTTA | 400 |
AAAGTGATTG GATCATGCAT GAGTATCGTC TCATCGAAAA CAAACCAAAC | 450 |
AATCGACCTC CTGGCTGTGA TTTCGGCAAC AAAAAAAACT CACTCAGACT | 500 |
TGATGATTGG GTGTTATGTA GAATCTACAA GAAGAACAAC GCAAGTCGAC | 550 |
ATGTTGATAA CGATAAGGAT CATGATATGA TCGATTACAT TTTCAGGAAG | 600 |
ATTCCTCCGT CTTTATCAAT GGCGGCTGCT TCTACAGGAC TTCACCAACA | 650 |
TCATCATAAT GTCTCAAGAT CAATGAATTT CTTCCCTGGC AAATTCTCCG | 700 |
GTGGTGGTTA CGGGATTTTC TCTGACGGTG GTAACACGAG TATATACGAC | 750 |
GGCGGTGGCA TGATCAACAA TATTGGTACT GACTCAGTAG ATCACGACAA | 800 |
TAACGCTGAC GTCGTTGGTT TAAATCATGC TTCGTCGTCA GGTCCTATGA | 850 |
TGATGGCGAA TTTGAAACGA ACTCTCCCGG TGCCGTATTG GCCTGTAGCA | 900 |
GATGAGGAGC AAGATGCATC TCCGAGCAAA CGGTTTCACG GTGTAGGAGG | 950 |
AGGAGGAGGA GATTGTTCGA ACATGTCTTC CTCCATGATG GAAGAGACTC | 1000 |
CACCATTGAT GCAACAACAA GGTGGTGTGT TAGGAGATGG ATTATTCAGA | 1050 |
ACGACATCGT ACCAATTACC CGGTTTAAAT TGGTACTCTT CTTAA | 1100 |
>AT3G15510.1 longest ORF length:364
MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKAA SAPLPVAIIA | 50 |
EVDLYKFDPW ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA | 100 |
TGTDKPVLAS DGNQKVGVKK ALVFYSGKPP KGVKSDWIMH EYRLIENKPN | 150 |
NRPPGCDFGN KKNSLRLDDW VLCRIYKKNN ASRHVDNDKD HDMIDYIFRK | 200 |
IPPSLSMAAA STGLHQHHHN VSRSMNFFPG KFSGGGYGIF SDGGNTSIYD | 250 |
GGGMINNIGT DSVDHDNNAD VVGLNHASSS GPMMMANLKR TLPVPYWPVA | 300 |
DEEQDASPSK RFHGVGGGGG DCSNMSSSMM EETPPLMQQQ GGVLGDGLFR | 350 |
TTSYQLPGLN WYSS | 400 |
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