fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G15510 ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)

>AT3G15510.1 CDS map

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Uncut enzymes: Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstF5I, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, StuI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 808
AccI GT|[AC][TG]AC 545
AciI C|CGC 32, 186
AflIII A|CPuPyGT 549, 971
AgeI A|CCGGT 301, 315
AluI AG|CT 84
AlwNI CAGNNN|CTG 119
ApoI Pu|AATTPy 166, 675, 691, 858
AvaII G|G[AT]CC 24, 840
BanI G|GPyPuCC 879
BclI T|GATCA 761
BfaI C|TAG 362
BglI GCCNNNN|NGGC 887
BsaBI GATNN|NNATC 566
BsaHI GPu|CGPyC 808
BsaJI C|CNNGG 175, 684
BsaWI [AT]|CCGG[AT] 19, 62, 301, 315, 697
BsiEI CGPuPy|CG 299
BsiHKAI G[AT]GC[AT]|C 6
BslI CCNNNNN|NNGG 344, 390
Bsp1286I G[GAT]GC[CAT]|C 6
BspDI AT|CGAT 580
BspHI T|CATGA 570
BspT107I(HgiCI) G|G[TC][AG]CC 879
BsrBI GAG|CGG 272
BsrFI Pu|CCGGPy 301, 315
BssKI |CCNGG 54, 459, 684, 875, 1068
BstAPI GCANNNN|NTGC 120
BstBI TT|CGAA 966
BstEII G|GTNACC 335
BstNI CC|[AT]GG 54, 459, 684
BtgI C|CPuPyGG 175
Cfr10I [AG]|CCGG[TC] 301, 315
ClaI AT|CGAT 580
DdeI C|TNAG 492, 782
DpnI GA-CH3|TC 155, 170, 236, 409, 566, 577, 666, 760, 788
DpnII |GATC 155, 170, 236, 409, 566, 577, 666, 760, 788
DraI TTT|AAA 819, 1074
EcoO109I PuG|GNCCPy 841
Fnu4HI GC|NGC 114, 273, 621
HaeIII GG|CC 888
HincII GTPy|PuAC 545
HinfI G|ANTC 12, 520, 599, 780, 995
HpaII C|CGG 18, 61, 300, 314, 696, 875, 1068
Hpy188I TCN|GA 239, 327, 493, 720, 920, 1045
Hpy99I CG[AT]CG| 77, 329, 746, 809, 832
HpyCH4III ACN|GT 331, 373, 724, 929, 937
HpyCH4IV A|CGT 807
HpyCH4V TG|CA 414, 913, 1008
MboI |GATC 155, 170, 236, 409, 566, 577, 666, 760, 788
MseI T|TAA 396, 818, 1073, 1090
MslI CAPyNN|NNPuTG 656
MspI C|CGG 18, 61, 300, 314, 696, 875, 1068
MwoI GCNNNNN|NNGC 120, 144, 887
NciI CC|[CG]GG 875, 1068
NcoI C|CATGG 175
NlaIII CATG| 174, 412, 416, 548, 569, 757, 824, 970, 982
NlaIV GGN|NCC 879
NsiI ATGCA|T 415, 914
NspI PuCATG|Py 549, 971
PciI A|CATGT 549, 971
PflMI CCANNNN|NTGG 344
PpuMI PuG|G[AT]CCPy 841
PspGI |CC[AT]GG 54, 459, 684
RsaI GT|AC 217, 303, 317, 774, 1057, 1081
SalI G|TCGAC 545
Sau3AI |GATC 155, 170, 236, 409, 566, 577, 666, 760, 788
Sau96I G|GNCC 24, 840
ScrFI CC|NGG 54, 459, 684, 875, 1068
SfcI C|TPuPyAG 372, 632, 893
SmlI C|TPyPuAG 663
SpeI A|CTAGT 363
SspI AAT|ATT 769
StyI C|C[AT][AT]GG 175
Taqƒ¿I T|CGA 153, 432, 451, 544, 579, 965
TfiI G|A[AT]TC 12, 520, 599
TseI G|C[AT]GC 114, 624
Tsp509I |AATT 165, 674, 690, 857, 1062, 1076
TspRI NNCA[CG]TGNN| 376
XmnI GAANN|NNTTC 679


Click here to view TAIR data

>AT3G15510.1 length:1095
ATGGAGAGCA CCGATTCTTC CGGTGGTCCA CCACCGCCAC AACCTAACCT 
50
TCCTCCAGGC TTCCGGTTTC ACCCTACCGA CGAAGAGCTT GTTGTTCACT 
100
ACCTCAAACG CAAAGCAGCC TCTGCTCCTT TACCTGTCGC CATCATCGCC 
150
GAAGTCGATC TCTATAAATT TGATCCATGG GAACTTCCCG CTAAAGCATC 
200
GTTTGGAGAA CAAGAATGGT ACTTCTTTAG TCCACGAGAT CGGAAGTATC 
250
CAAACGGAGC AAGACCAAAC AGAGCGGCGA CTTCAGGTTA TTGGAAAGCG 
300
ACCGGTACAG ATAAACCGGT ACTTGCTTCC GACGGTAACC AAAAGGTGGG 
350
CGTGAAGAAG GCACTAGTCT TCTACAGTGG TAAACCACCA AAAGGCGTTA 
400
AAAGTGATTG GATCATGCAT GAGTATCGTC TCATCGAAAA CAAACCAAAC 
450
AATCGACCTC CTGGCTGTGA TTTCGGCAAC AAAAAAAACT CACTCAGACT 
500
TGATGATTGG GTGTTATGTA GAATCTACAA GAAGAACAAC GCAAGTCGAC 
550
ATGTTGATAA CGATAAGGAT CATGATATGA TCGATTACAT TTTCAGGAAG 
600
ATTCCTCCGT CTTTATCAAT GGCGGCTGCT TCTACAGGAC TTCACCAACA 
650
TCATCATAAT GTCTCAAGAT CAATGAATTT CTTCCCTGGC AAATTCTCCG 
700
GTGGTGGTTA CGGGATTTTC TCTGACGGTG GTAACACGAG TATATACGAC 
750
GGCGGTGGCA TGATCAACAA TATTGGTACT GACTCAGTAG ATCACGACAA 
800
TAACGCTGAC GTCGTTGGTT TAAATCATGC TTCGTCGTCA GGTCCTATGA 
850
TGATGGCGAA TTTGAAACGA ACTCTCCCGG TGCCGTATTG GCCTGTAGCA 
900
GATGAGGAGC AAGATGCATC TCCGAGCAAA CGGTTTCACG GTGTAGGAGG 
950
AGGAGGAGGA GATTGTTCGA ACATGTCTTC CTCCATGATG GAAGAGACTC 
1000
CACCATTGAT GCAACAACAA GGTGGTGTGT TAGGAGATGG ATTATTCAGA 
1050
ACGACATCGT ACCAATTACC CGGTTTAAAT TGGTACTCTT CTTAA
1100

>AT3G15510.1 longest ORF length:364
MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKAA SAPLPVAIIA 
50
EVDLYKFDPW ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA 
100
TGTDKPVLAS DGNQKVGVKK ALVFYSGKPP KGVKSDWIMH EYRLIENKPN 
150
NRPPGCDFGN KKNSLRLDDW VLCRIYKKNN ASRHVDNDKD HDMIDYIFRK 
200
IPPSLSMAAA STGLHQHHHN VSRSMNFFPG KFSGGGYGIF SDGGNTSIYD 
250
GGGMINNIGT DSVDHDNNAD VVGLNHASSS GPMMMANLKR TLPVPYWPVA 
300
DEEQDASPSK RFHGVGGGGG DCSNMSSSMM EETPPLMQQQ GGVLGDGLFR 
350
TTSYQLPGLN WYSS
400