fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G15540 MSG2, IAA19 MASSUGU 2, indole-3-acetic acid inducible 19 (.1)

>AT3G15540.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 263
PstI CTGCA|G 568
PvuII CAG|CTG 252
StyI C|C[AT][AT]GG 351, 496
XbaI T|CTAGA 510


Click here to view TAIR data

>AT3G15540.1 length:594
ATGGAGAAGG AAGGACTCGG GCTTGAGATA ACGGAGCTGA GATTGGGGCT 
50
TCCGGGGAGA GATGTGGCAG AGAAGATGAT GAAGAAGAGA GCTTTCACGG 
100
AGATGAATAT GACGTCGTCG GGTAGTAATA GTGATCAATG TGAAAGCGGC 
150
GTCGTTTCAT CTGGTGGTGA CGCTGAGAAG GTTAATGATT CGCCGGCGGC 
200
GAAAAGCCAG GTGGTGGGGT GGCCACCGGT TTGTTCTTAC CGGAAGAAAA 
250
ACAGCTGTAA GGAAGCTTCG ACCACGAAAG TGGGGTTAGG GTATGTGAAA 
300
GTGAGCATGG ATGGTGTGCC TTATTTGAGG AAGATGGATC TTGGTTCGAG 
350
CCAAGGCTAT GATGATCTAG CCTTTGCTCT TGATAAGCTC TTCGGTTTCC 
400
GTGGCATCGG TGTGGCCTTG AAAGATGGTG ACAACTGCGA ATACGTTACC 
450
ATATACGAAG ACAAAGATGG AGACTGGATG CTCGCCGGTG ATGTACCTTG 
500
GGGGATGTTT CTAGAGTCAT GCAAGAGGTT GAGAATAATG AAAAGATCGG 
550
ATGCTACCGG GTTTGGGCTG CAGCCTAGAG GAGTAGACGA GTGA
600

>AT3G15540.1 longest ORF length:197
MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG 
50
VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK 
100
VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT 
150
IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
200