fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G16280 Integrase-type DNA-binding superfamily protein (.1)

>AT3G16280.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 397
NcoI C|CATGG 428
StyI C|C[AT][AT]GG 428


Click here to view TAIR data

>AT3G16280.1 length:711
ATGACGTCAC TCAACAGCTC TGCATCACCA ACATCATCGT CATCAGACCA 
50
ATCTGATGCA ACTACTACAA CAAGCACCCA CTTGTCTGAA GAAGAAGCTC 
100
CACCCAGAAA CAACAACACA AGAAAGAGAA GGAGAGATTC TTCTTCTGCT 
150
TCTTCATCTT CTTCAATGCA ACATCCTGTT TACAGAGGTG TGCGGATGAG 
200
AAGTTGGGGC AAATGGGTCT CCGAGATCCG ACAACCTCGT AAGAAAACTC 
250
GTATTTGGCT CGGCACTTTT GTCACCGCTG ATATGGCTGC TCGTGCTCAC 
300
GACGTCGCTG CTCTCACCAT CAAAGGCTCC TCCGCCGTCT TAAATTTCCC 
350
TGAGCTTGCT TCTCTCTTCC CTCGTCCGGC GTCATCATCG CCGCATGATA 
400
TCCAGACAGC CGCCGCAGAA GCCGCCGCCA TGGTGGTCGA AGAAAAACTG 
450
TTAGAGAAGG ATGAGGCTCC GGAGGCCCCA CCTTCGTCGG AATCTTCTTA 
500
CGTGGCGGCG GAGTCAGAGG ATGAGGAGAG GTTGGAGAAA ATTGTGGAGC 
550
TGCCTAACAT TGAAGAAGGA AGTTATGACG AGAGTGTGAC ATCACGTGCT 
600
GATCTGGCTT ATTCTGAGCC GTTCGATTGT TGGGTGTATC CTCCGGTTAT 
650
GGATTTTTAT GAAGAAATAT CGGAGTTTAA TTTCGTGGAA TTGTGGAGCT 
700
TTAATCACTA A
750

>AT3G16280.1 longest ORF length:236
MTSLNSSASP TSSSSDQSDA TTTTSTHLSE EEAPPRNNNT RKRRRDSSSA 
50
SSSSSMQHPV YRGVRMRSWG KWVSEIRQPR KKTRIWLGTF VTADMAARAH 
100
DVAALTIKGS SAVLNFPELA SLFPRPASSS PHDIQTAAAE AAAMVVEEKL 
150
LEKDEAPEAP PSSESSYVAA ESEDEERLEK IVELPNIEEG SYDESVTSRA 
200
DLAYSEPFDC WVYPPVMDFY EEISEFNFVE LWSFNH
250