fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G16500 IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1)

>AT3G16500.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 583
KpnI GGTAC|C 71
NcoI C|CATGG 700
StyI C|C[AT][AT]GG 700


Click here to view TAIR data

>AT3G16500.1 length:810
ATGGAAGGTT GTCCAAGAAA CAGAGAAATC GGTCCAAAAC TTCTTGATTT 
50
GATTCCACAA GGAAGGAAAT GGTACCAAGA AGACAAGAAC AACACAGATC 
100
AGGAGAAGAA ACTTGAGCTA AGGCTTGGAC CACCCGGTGG TGATGAAGAA 
150
GATCATTCAG CAATCAAGAA GAAGAACACA GAGATAAGAA ACATCAAGAA 
200
GGAAACAGAA GACAAATCTT TCCACTGTTT TAATGGCAAT CACTTCTCTC 
250
CTTCCAACAA AACCACTTCT GTTCCTCACA TCTCACAGAA AAGAACTGCT 
300
CCTGGTCCAG TGGTGGGTTG GCCTCCGGTT CGTTCGTTCA GAAAGAATCT 
350
AGCGAGCACA AGCTCTTCAA AGCTAGGTAA CGAATCCTCT CATGGAGGTC 
400
AAATCAACAA GAGTGATGAT GGTGAAAAAC AAGTTGAAAC CAAGAAGGAA 
450
GGAATGTTTG TCAAGATCAA CATGGATGGT GTTCCTATTG GTCGTAAAGT 
500
TGATCTCAAT GCTTACAACA GCTACGAACA GCTCTCTTTT GTCGTTGACA 
550
AACTCTTCAG AGGTCTACTC GCAGCTCAAA GAGATATCTC TGATGGTCAA 
600
GGAGAAGAGA AACCTATCAT TGGATTATTA GATGGGAAAG GAGAATTTAC 
650
TTTAACCTAT GAAGACAATG AAGGGGACAA GATGCTTGTT GGGGATGTTC 
700
CATGGCAAAT GTTTGTTTCA TCTGTGAAGA GACTGCGTGT GATTAAAAGC 
750
TCTGAGATTT CATCTGCCTT GACATTTGGA TGCAGTAAGC AAGAGAAGAT 
800
GATGCACTGA 
850

>AT3G16500.1 longest ORF length:269
MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE 
50
DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA 
100
PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE 
150
GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ 
200
GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS 
250
SEISSALTFG CSKQEKMMH
300