Locus |
Common name |
Short description |
AT3G16500 |
IAA26, PAP1 |
indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) |
>AT3G16500.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
EcoRV
| GAT|ATC |
583 |
KpnI
| GGTAC|C |
71 |
NcoI
| C|CATGG |
700 |
StyI
| C|C[AT][AT]GG |
700 |
Click here to view TAIR data
>AT3G16500.1 length:810
ATGGAAGGTT GTCCAAGAAA CAGAGAAATC GGTCCAAAAC TTCTTGATTT | 50 |
GATTCCACAA GGAAGGAAAT GGTACCAAGA AGACAAGAAC AACACAGATC | 100 |
AGGAGAAGAA ACTTGAGCTA AGGCTTGGAC CACCCGGTGG TGATGAAGAA | 150 |
GATCATTCAG CAATCAAGAA GAAGAACACA GAGATAAGAA ACATCAAGAA | 200 |
GGAAACAGAA GACAAATCTT TCCACTGTTT TAATGGCAAT CACTTCTCTC | 250 |
CTTCCAACAA AACCACTTCT GTTCCTCACA TCTCACAGAA AAGAACTGCT | 300 |
CCTGGTCCAG TGGTGGGTTG GCCTCCGGTT CGTTCGTTCA GAAAGAATCT | 350 |
AGCGAGCACA AGCTCTTCAA AGCTAGGTAA CGAATCCTCT CATGGAGGTC | 400 |
AAATCAACAA GAGTGATGAT GGTGAAAAAC AAGTTGAAAC CAAGAAGGAA | 450 |
GGAATGTTTG TCAAGATCAA CATGGATGGT GTTCCTATTG GTCGTAAAGT | 500 |
TGATCTCAAT GCTTACAACA GCTACGAACA GCTCTCTTTT GTCGTTGACA | 550 |
AACTCTTCAG AGGTCTACTC GCAGCTCAAA GAGATATCTC TGATGGTCAA | 600 |
GGAGAAGAGA AACCTATCAT TGGATTATTA GATGGGAAAG GAGAATTTAC | 650 |
TTTAACCTAT GAAGACAATG AAGGGGACAA GATGCTTGTT GGGGATGTTC | 700 |
CATGGCAAAT GTTTGTTTCA TCTGTGAAGA GACTGCGTGT GATTAAAAGC | 750 |
TCTGAGATTT CATCTGCCTT GACATTTGGA TGCAGTAAGC AAGAGAAGAT | 800 |
GATGCACTGA | 850 |
>AT3G16500.1 longest ORF length:269
MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE | 50 |
DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA | 100 |
PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE | 150 |
GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ | 200 |
GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS | 250 |
SEISSALTFG CSKQEKMMH | 300 |
|