fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G16770 RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)

>AT3G16770.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HindIII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XbaI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AciI C|CGC 99, 440
AluI AG|CT 87, 337, 390, 626, 645, 678
AlwNI CAGNNN|CTG 577
BanII GPuGCPy|C 88
BglII A|GATCT 405
BsaAI PyAC|GTPu 245
BsaBI GATNN|NNATC 605
BsaJI C|CNNGG 44, 50, 205, 256, 344, 375, 698
BsiHKAI G[AT]GC[AT]|C 88
BslI CCNNNNN|NNGG 294, 647
Bsp1286I G[GAT]GC[CAT]|C 88
BssKI |CCNGG 204, 533
BstF5I GGATGNN| 714
BstYI Pu|GATCPy 285, 371, 405
BtgI C|CPuPyGG 256, 344, 375
BtsI GCAGTGNN| 180
Cac8I GCN|NGC 192
DdeI C|TNAG 70, 274, 499, 579
DpnI GA-CH3|TC 284, 370, 404, 456, 464, 605
DpnII |GATC 284, 370, 404, 456, 464, 605
EaeI Py|GGCCPu 362
EcoRV GAT|ATC 621
Fnu4HI GC|NGC 102, 270, 339, 360
HaeIII GG|CC 46, 53, 361
HincII GTPy|PuAC 160
HinfI G|ANTC 278, 633, 674, 687
HpaI GTT|AAC 160
HpaII C|CGG 203, 473, 533, 596
Hpy188I TCN|GA 21, 84, 500, 572, 608, 696
Hpy99I CG[AT]CG| 107, 733
HpyCH4III ACN|GT 652
HpyCH4IV A|CGT 162, 244, 317
HpyCH4V TG|CA 408
MboI |GATC 284, 370, 404, 456, 464, 605
MseI T|TAA 159, 515
MspI C|CGG 203, 473, 533, 596
MwoI GCNNNNN|NNGC 102, 336, 449
N.BstNBI GAGTCNNNN|N 679, 692
NciI CC|[CG]GG 204, 533
NcoI C|CATGG 256, 344
NlaIII CATG| 255, 343
RsaI GT|AC 315
SacI GAGCT|C 88
Sau3AI |GATC 284, 370, 404, 456, 464, 605
Sau96I G|GNCC 53
ScrFI CC|NGG 204, 533
SmlI C|TPyPuAG 643
SnaBI TAC|GTA 245
StyI C|C[AT][AT]GG 44, 50, 256, 344
Taqƒ¿I T|CGA 90, 280, 623
TfiI G|A[AT]TC 278, 633
TseI G|C[AT]GC 339
Tsp45I |GT[CG]AC 39
Tsp509I |AATT 428
TspRI NNCA[CG]TGNN| 180
XcmI CCANNNNN|NNNNTGG 265


Click here to view TAIR data

>AT3G16770.1 length:747
ATGTGTGGCG GTGCTATTAT TTCCGATTAT GCCCCTCTCG TCACCAAGGC 
50
CAAGGGCCGT AAACTCACGG CTGAGGAACT CTGGTCAGAG CTCGATGCTT 
100
CCGCCGCCGA CGACTTCTGG GGTTTCTATT CCACCTCCAA ACTCCATCCC 
150
ACCAACCAAG TTAACGTGAA AGAGGAGGCA GTGAAGAAGG AGCAGGCAAC 
200
AGAGCCGGGG AAACGGAGGA AGAGGAAGAA TGTTTATAGA GGGATACGTA 
250
AGCGTCCATG GGGAAAATGG GCGGCTGAGA TTCGAGATCC ACGAAAAGGT 
300
GTTAGAGTTT GGCTTGGTAC GTTCAACACG GCGGAGGAAG CTGCCATGGC 
350
TTATGATGTT GCGGCCAAGC AGATCCGTGG TGATAAAGCC AAGCTCAACT 
400
TCCCAGATCT GCACCATCCT CCTCCTCCTA ATTATACTCC TCCGCCGTCA 
450
TCGCCACGAT CAACCGATCA GCCTCCGGCG AAGAAGGTCT GCGTTGTCTC 
500
TCAGAGTGAG AGCGAGTTAA GTCAGCCGAG TTTCCCGGTG GAGTGTATAG 
550
GATTTGGAAA TGGGGACGAG TTTCAGAACC TGAGTTACGG ATTTGAGCCG 
600
GATTATGATC TGAAACAGCA GATATCGAGC TTGGAATCGT TCCTTGAGCT 
650
GGACGGTAAC ACGGCGGAGC AACCGAGTCA GCTTGATGAG TCCGTTTCCG 
700
AGGTGGATAT GTGGATGCTT GATGATGTCA TTGCGTCGTA TGAGTAA
750

>AT3G16770.1 longest ORF length:248
MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP 
50
TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG 
100
VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS 
150
SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP 
200
DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
250