fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G17860 TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3)

>AT3G17860.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 796
BglII A|GATCT 460
HindIII A|AGCTT 348
NheI G|CTAGC 570


Click here to view TAIR data

>AT3G17860.2 length:1020
ATGTTTGACT TTAAACTGAT TATCTTTTAT TCTTTTTCTT TTGTAGCTCC 
50
CAACAGAGGA ATGAACTGGT CTTTCTCAAA CAAAGTATCA GCTTCTTCTT 
100
CTCAGTTTCT ATCCTTCAGG CCAACTCAAG AAGATAGACA TAGAAAGTCT 
150
GGAAATTATC ATCTTCCTCA CTCTGGTTCC TTCATGCCAT CATCAGTAGC 
200
TGATGTTTAT GATTCAACCC GCAAAGCTCC TTACAGTTCT GTACAGGGAG 
250
TGAGGATGTT CCCTAATTCC AATCAACACG AAGAAACTAA CGCAGTTTCC 
300
ATGTCGATGC CGGGTTTCCA GTCTCATCAT TATGCACCAG GAGGAAGAAG 
350
CTTCATGAAC AATAACAATA ACTCACAACC TTTGGTAGGA GTTCCTATCA 
400
TGGCACCTCC AATTTCAATC CTTCCTCCTC CAGGTTCCAT TGTAGGGACT 
450
ACTGATATTA GATCTTCTTC CAAGCCAATA GGTTCACCTG CGCAGTTGAC 
500
GATCTTTTAT GCCGGTTCAG TTTGTGTTTA CGATGACATA TCTCCTGAAA 
550
AGGCAAAGGC GATAATGTTG CTAGCTGGGA ACGGTTCCTC TATGCCTCAA 
600
GTCTTTTCGC CGCCTCAAAC TCATCAACAA GTGGTCCATC ATACTCGTGC 
650
CTCTGTCGAT TCTTCAGCTA TGCCTCCTAG CTTCATGCCT ACAATATCTT 
700
ATCTTAGCCC TGAAGCTGGA AGTAGCACAA ACGGACTCGG AGCCACAAAA 
750
GCGACAAGAG GCTTGACGTC AACATATCAC AACAACCAAG CTAATGGATC 
800
CAATATTAAC TGCCCAGTAC CAGTTTCTTG TTCTACCAAT GTAATGGCTC 
850
CAACAGTGGC ATTACCTCTG GCTCGCAAAG CATCCCTGGC TAGGTTTTTA 
900
GAGAAACGCA AAGAAAGGGT CACGAGCGTA TCCCCATATT GCTTAGACAA 
950
GAAGTCATCG ACAGATTGTC GCAGATCAAT GTCTGAATGC ATTAGTTCTT 
1000
CTCTCAGCTC TGCAACCTAA 
1050

>AT3G17860.2 longest ORF length:339
MFDFKLIIFY SFSFVAPNRG MNWSFSNKVS ASSSQFLSFR PTQEDRHRKS 
50
GNYHLPHSGS FMPSSVADVY DSTRKAPYSS VQGVRMFPNS NQHEETNAVS 
100
MSMPGFQSHH YAPGGRSFMN NNNNSQPLVG VPIMAPPISI LPPPGSIVGT 
150
TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ 
200
VFSPPQTHQQ VVHHTRASVD SSAMPPSFMP TISYLSPEAG SSTNGLGATK 
250
ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL 
300
EKRKERVTSV SPYCLDKKSS TDCRRSMSEC ISSSLSSAT
350