fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G18100 ATMYB4R1 myb domain protein 4r1 (.1.2.3)

>AT3G18100.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HpaI, KpnI, NheI, NotI, PacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 556
EcoRV GAT|ATC 954, 1255, 1399, 1451
HindIII A|AGCTT 573, 809, 1461
NcoI C|CATGG 275, 359
NdeI CA|TATG 637, 1157
PstI CTGCA|G 1274, 1337, 1496, 1523, 2504
PvuII CAG|CTG 644
SacI GAGCT|C 1299
StyI C|C[AT][AT]GG 245, 275, 359, 2485
XbaI T|CTAGA 2061


Click here to view TAIR data

>AT3G18100.1 length:2544
ATGAATCGGA ACAGCCTATA CGAAGCTGAT GACGATGATG ACGATGACGA 
50
AGAAGATGAC ATCGGTGAAG ACCTCGAAGA TTTAAGACGC GCATGTATGG 
100
TCTCTGACGT TAATTCCGAT CAATTCGCGT CAAAAACCGG TTCAATTGAA 
150
CCGGAAGGAG TCGGTGGCGG AGAGATACCG TCGGATTCAG AAAACGAAGA 
200
TGACTTTGAG ATGCTTCGTA CAATTAAGAG CCAATTAGCA TCTTCCAAGG 
250
ATGCGGGTAG AAGCAGTGGT CCTCCCATGG GTTTGTCCTT GCTCTCGGAT 
300
TCGGAGAGTG AAGATGATTT CGAGATGATT CGGAGTATTA AGAGCCAATT 
350
GTCATTGTCC ATGGATGTGT CCCTTCCTCC AATTGGTTTA TCTGACGATG 
400
AAGAAGATGA TGCCTTTGAA ACACTTCGTG CTATTCGTAG GCGATTCTCT 
450
GCTTATAAGA ATTTCGATTC GGAAGGAAAA TTCATGAATG ATTCTCACGG 
500
GAAGAAAAAG CAGGTACATA ACTCGGACAA TGAACCTTCA AGCGAAATAT 
550
TGAGTAGATC TAATACTTGT GAAAGCTTTC CAGATCACGG GAAATCAGTT 
600
GTCACTGTGC CAGACTCAGA GGATGTACAA GATGGTCATA TGCCAGCTGC 
650
GAGTTCAAGT TTCCCTGAAG CTGCACGAGC GTTTGTTGAT GCAATCAGGA 
700
GAAACAGAGC ATATCAGAAA TTTCTTAGAG GAAAATTGGC AGAAATTGAA 
750
GCAACGATCG AGCAGAACGA GAAACACAAG AAAAATGTTA GAATAGTCAA 
800
AGATTTTCAA GCTTCTTGCA AGAGAATTAC TAAACTGGCA CTCTGTCAGA 
850
GGAAAGATCC TCGTGTCGAA TTAATCTCAA CACGGAAATC TGGGCCTTGT 
900
GATAGCTCCG AGGTAATTGG GCCTTGTGAT AGCTTCGAGG GTAATGATAA 
950
AAAGATATCT CCTTTGACGT TGGGTCCAGC GGAAAACCCT TGTGTTGAAA 
1000
ATTATAGGAT GGCACTAGAG AAATATCCAA TTTCAGTGAA ACGCAGAAAA 
1050
TGGTCTACTG AGGAGAACAA AAACCTCGCA AAAGGTTTAA AACAAGAAGT 
1100
TCAAAAGATA CTGCTTTCTG AAGCAATTGA ACGGTCCAGT GACTTGGAAG 
1150
GAGCTACATA TGATATAGAC ACTATCAATG AATCGATCGG AAATCTTGAG 
1200
ATCACACCAG AAATGATTAG GCAGTTTCTT CCGAAAATTA ACTGGGATTC 
1250
GTTGGATATC AAGGACCGTT CTGCTGCAGA ATGTGAAGCT CGGTGGATGA 
1300
GCTCGGAAGA TCCATTGATT AACCACGGTC CGTGGACTGC AGCAGAGGAC 
1350
AAAAACCTAC TCCGAACTAT CGAACAAACG AGTCTTACAG ACTGGGTTGA 
1400
TATCGCGGTG TCACTAGGGA CAAATAGGAC CCCATTTCAA TGTTTGGCTC 
1450
GATATCAGAG AAGCTTGAAT CCAAGCATAT TGAAAAAAGA ATGGACTGCA 
1500
GAGGAAGATG ACCAACTTCG TACTGCAGTA GAGTTATTTG GGGAGAAAGA 
1550
CTGGCAATCT GTTGCAAATG TATTAAAAGG AAGAACTGGA ACTCAGTGCT 
1600
CGAATAGATG GAAAAAGTCG CTTCGCCCTA CCAGAAAAGG GACATGGAGC 
1650
TTAGAGGAAG ACAAACGTGT AAAGGTAGCT GTGACACTCT TTGGATCTCA 
1700
AAACTGGCAT AAAATTTCTC AGTTTGTTCC TGGACGGACT CAGACTCAGT 
1750
GTCGGGAGAG ATGGTTAAAT TGTTTAGATC CCAAAGTAAA TCGTGGGAAG 
1800
TGGACTGAGG AAGAGGATGA AAAGTTGAGA GAAGCAATTG CAGAGCATGG 
1850
ATATAGCTGG TCTAAGGTGG CTACTAATCT GTCATGTCGT ACTGACAATC 
1900
AGTGCTTGAG GAGATGGAAG AGATTATATC CTCATCAAGT GGCTCTTTTA 
1950
CAAGAAGCTA GAAGGTTACA AAAAGAAGCT AGTGTAGGTA ATTTTGTTGA 
2000
TCGGGAATCA GAGCGTCCTG CTCTTGTCAC AAGCCCTATT TTGGCACTAC 
2050
CGGATATATC TCTAGAGCCA GAACCCGATA GTGTAGCCCT GAAGAAGAAA 
2100
CGCAAAGCCA AGCAGAAGAA GTCAGATGCA GAGAGACAAC CAAAGAGACG 
2150
GAGAAAAGGA TTAAAGAACT GCTCAGGAGA TGTATGTAGA CAAGAGAATG 
2200
AGACTGTTTG TGAAAATGAA CCGAACAATG GAGGAGAGGA AAGGATGTTG 
2250
GCATTGGAAT GTCATGACGA GATCCAAGAC AATGCAAAGG AGAAGCCAAA 
2300
ACAAAGACGC AAAAGTGTTG CAGAAACTGT TTGTGAAAAT GAACCAAACA 
2350
ATGGAGGAGA GGAGAGGATG TTGGCATTGG AATGTGATAA CGAGATCCAA 
2400
GACAATGCAA AGGAGAAACG AAAACGAAGA CGCAAAAGTG TTGCAGAAAC 
2450
ATCTAACAAC ACCACTGGTT TAAAAAAACT TACGCCTAGG AGAAGGAAAA 
2500
TATCTGCAGT TGTTCCTATT AAGAACCAAG ATGCACCAAA TTAG
2550

>AT3G18100.1 longest ORF length:847
MNRNSLYEAD DDDDDDEEDD IGEDLEDLRR ACMVSDVNSD QFASKTGSIE 
50
PEGVGGGEIP SDSENEDDFE MLRTIKSQLA SSKDAGRSSG PPMGLSLLSD 
100
SESEDDFEMI RSIKSQLSLS MDVSLPPIGL SDDEEDDAFE TLRAIRRRFS 
150
AYKNFDSEGK FMNDSHGKKK QVHNSDNEPS SEILSRSNTC ESFPDHGKSV 
200
VTVPDSEDVQ DGHMPAASSS FPEAARAFVD AIRRNRAYQK FLRGKLAEIE 
250
ATIEQNEKHK KNVRIVKDFQ ASCKRITKLA LCQRKDPRVE LISTRKSGPC 
300
DSSEVIGPCD SFEGNDKKIS PLTLGPAENP CVENYRMALE KYPISVKRRK 
350
WSTEENKNLA KGLKQEVQKI LLSEAIERSS DLEGATYDID TINESIGNLE 
400
ITPEMIRQFL PKINWDSLDI KDRSAAECEA RWMSSEDPLI NHGPWTAAED 
450
KNLLRTIEQT SLTDWVDIAV SLGTNRTPFQ CLARYQRSLN PSILKKEWTA 
500
EEDDQLRTAV ELFGEKDWQS VANVLKGRTG TQCSNRWKKS LRPTRKGTWS 
550
LEEDKRVKVA VTLFGSQNWH KISQFVPGRT QTQCRERWLN CLDPKVNRGK 
600
WTEEEDEKLR EAIAEHGYSW SKVATNLSCR TDNQCLRRWK RLYPHQVALL 
650
QEARRLQKEA SVGNFVDRES ERPALVTSPI LALPDISLEP EPDSVALKKK 
700
RKAKQKKSDA ERQPKRRRKG LKNCSGDVCR QENETVCENE PNNGGEERML 
750
ALECHDEIQD NAKEKPKQRR KSVAETVCEN EPNNGGEERM LALECDNEIQ 
800
DNAKEKRKRR RKSVAETSNN TTGLKKLTPR RRKISAVVPI KNQDAPN
850