fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G18400 ANAC058 NAC domain containing protein 58 (.1)

>AT3G18400.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 582
NdeI CA|TATG 936
SacI GAGCT|C 49, 341
SalI G|TCGAC 112
StyI C|C[AT][AT]GG 139, 155, 735


Click here to view TAIR data

>AT3G18400.1 length:945
ATGGAAGAAA ATCTTCCTCC GGGGTTCAGA TTTCATCCTA CAGACGAGGA 
50
GCTCATAACG CATTATCTAT GTCGGAAAGT CTCCGATATA GGATTCACCG 
100
GTAAAGCTGT CGTCGACGTT GATCTCAACA AGTGTGAACC TTGGGATTTG 
150
CCAGCCAAGG CTTCAATGGG AGAGAAAGAG TGGTATTTCT TCAGCCAAAG 
200
GGATCGGAAA TATCCAACCG GTTTAAGAAC AAACCGGGCA ACAGAAGCTG 
250
GTTACTGGAA AACCACCGGG AAAGATAAAG AAATATACCG AAGTGGAGTG 
300
TTGGTTGGGA TGAAGAAAAC CCTAGTTTTC TACAAAGGAA GAGCTCCCAA 
350
AGGTGAGAAA AGCAATTGGG TTATGCATGA GTACAGGCTT GAGAGCAAAC 
400
AACCTTTCAA CCCCACGAAT AAGGAGGAAT GGGTAGTGTG TAGGGTTTTC 
450
GAAAAGAGCA CGGCAGCAAA GAAAGCACAA GAACAACAAC CTCAATCTTC 
500
TCAACCATCT TTTGGATCTC CATGCGATGC AAACTCATCA ATGGCAAATG 
550
AGTTTGAAGA TATTGATGAG CTTCCGAATC TGAATTCAAA CTCATCAACC 
600
ATCGATTACA ATAATCATAT CCATCAATAT TCGCAACGCA ATGTTTACTC 
650
AGAAGACAAC ACAACAAGTA CGGCTGGTCT CAACATGAAC ATGAACATGG 
700
CTAGTACTAA TCTTCAGTCT TGGACAACAA GTCTCCTTGG TCCGCCTTTA 
750
TCTCCAATCA ACTCTTTGTT GCTCAAGGCT TTCCAAATCA GGAACTCTTA 
800
TAGTTTCCCA AAAGAGATGA TCCCCAGTTT CAATCATTCT TCTCTTCAAC 
850
AAGGAGTCTC CAATATGATC CAAAATGCTT CAAGTTCGTC TCAAGTGCAA 
900
CCCCAACCGC AAGAGGAAGC GTTTAATATG GACTCCATAT GGTGA
950

>AT3G18400.1 longest ORF length:314
MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL 
50
PAKASMGEKE WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV 
100
LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF 
150
EKSTAAKKAQ EQQPQSSQPS FGSPCDANSS MANEFEDIDE LPNLNSNSST 
200
IDYNNHIHQY SQRNVYSEDN TTSTAGLNMN MNMASTNLQS WTTSLLGPPL 
250
SPINSLLLKA FQIRNSYSFP KEMIPSFNHS SLQQGVSNMI QNASSSSQVQ 
300
PQPQEEAFNM DSIW
350