fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G18550 AtBRC1, ATTCP18, TCP18, BRC1, TCP12 BRANCHED 1, TCP family transcription factor (.1.2)

>AT3G18550.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 685
NcoI C|CATGG 636, 689
SalI G|TCGAC 736
StyI C|C[AT][AT]GG 636, 689, 857, 1197


Click here to view TAIR data

>AT3G18550.1 length:1302
ATGAACAACA ACATTTTCAG TACTACTACC ACCATCAATG ACGACTACAT 
50
GTTATTCCCT TATAATGACC ATTATTCCTC ACAACCATTG CTCCCTTTTA 
100
GCCCTTCTTC TTCCATTAAC GACATCTTGA TTCACTCCAC CTCTAACACA 
150
TCAAACAATC ATCTTGACCA TCATCATCAA TTCCAACAAC CTTCTCCTTT 
200
TTCTCACTTC GAATTTGCCC CGGACTGCGC CCTCCTCACC TCTTTCCACC 
250
CAGAAAACAA TGGCCATGAT GATAACCAAA CCATCCCAAA CGACAATCAT 
300
CATCCATCAC TTCACTTTCC CTTGAACAAC ACCATTGTAG AACAACCCAC 
350
TGAGCCCTCG GAAACTATAA ACCTTATAGA AGATTCCCAG AGAATCTCAA 
400
CTTCTCAAGA CCCAAAAATG AAAAAAGCCA AGAAACCCAG CAGAACGGAC 
450
AGGCACAGCA AGATCAAAAC GGCCAAAGGG ACACGAGATC GTAGGATGAG 
500
ACTCTCGCTA GATGTCGCCA AAGAGTTGTT TGGCTTACAA GACATGCTTG 
550
GATTTGACAA AGCCAGCAAA ACCGTTGAAT GGTTGCTTAC ACAAGCAAAA 
600
CCTGAGATCA TAAAGATCGC GACAACCCTT TCTCACCATG GCTGCTTCAG 
650
CAGCGGCGAT GAGTCTCATA TCCGACCGGT GTTAGGATCC ATGGACACAT 
700
CTTCTGATCT ATGTGAACTT GCATCCATGT GGACGGTCGA CGATAGAGGC 
750
AGCAATACTA ACACGACCGA AACAAGAGGA AACAAGGTCG ATGGGAGATC 
800
GATGAGAGGG AAGAGAAAGA GGCCAGAACC GCGAACGCCC ATTTTAAAGA 
850
AGTTGTCCAA GGAGGAGAGA GCGAAAGCTA GAGAAAGAGC AAAGGGTAGA 
900
ACAATGGAGA AAATGATGAT GAAGATGAAA GGAAGATCAC AATTAGTGAA 
950
AGTTGTGGAA GAAGACGCTC ATGATCATGG TGAGATAATA AAGAATAATA 
1000
ATAGAAGCCA AGTGAATCGG AGTTCTTTTG AGATGACACA CTGCGAAGAC 
1050
AAGATCGAAG AACTTTGCAA GAACGATCGT TTTGCAGTTT GCAACGAATT 
1100
TATCATGAAT AAGAAAGATC ACATTTCAAA TGAATCTTAT GACTTAGTCA 
1150
ACTACAAACC GAACTCATCA TTCCCAGTGA TTAACCACCA TCGCAGCCAA 
1200
GGAGCAGCTA ATTCCATTGA GCAGCATCAG TTTACGGATC TTCATTACTC 
1250
CTTCGGCGCG AAACCAAGAG ACCTCATGCA CAACTATCAA AACATGTATT 
1300
GA
1350

>AT3G18550.1 longest ORF length:433
MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT 
50
SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH 
100
HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD 
150
RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK 
200
PEIIKIATTL SHHGCFSSGD ESHIRPVLGS MDTSSDLCEL ASMWTVDDRG 
250
SNTNTTETRG NKVDGRSMRG KRKRPEPRTP ILKKLSKEER AKARERAKGR 
300
TMEKMMMKMK GRSQLVKVVE EDAHDHGEII KNNNRSQVNR SSFEMTHCED 
350
KIEELCKNDR FAVCNEFIMN KKDHISNESY DLVNYKPNSS FPVINHHRSQ 
400
GAANSIEQHQ FTDLHYSFGA KPRDLMHNYQ NMY
450