fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G18550 AtBRC1, ATTCP18, TCP18, BRC1, TCP12 BRANCHED 1, TCP family transcription factor (.1.2)

>AT3G18550.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 636, 677
SalI G|TCGAC 724
StyI C|C[AT][AT]GG 636, 677, 845, 1185


Click here to view TAIR data

>AT3G18550.2 length:1290
ATGAACAACA ACATTTTCAG TACTACTACC ACCATCAATG ACGACTACAT 
50
GTTATTCCCT TATAATGACC ATTATTCCTC ACAACCATTG CTCCCTTTTA 
100
GCCCTTCTTC TTCCATTAAC GACATCTTGA TTCACTCCAC CTCTAACACA 
150
TCAAACAATC ATCTTGACCA TCATCATCAA TTCCAACAAC CTTCTCCTTT 
200
TTCTCACTTC GAATTTGCCC CGGACTGCGC CCTCCTCACC TCTTTCCACC 
250
CAGAAAACAA TGGCCATGAT GATAACCAAA CCATCCCAAA CGACAATCAT 
300
CATCCATCAC TTCACTTTCC CTTGAACAAC ACCATTGTAG AACAACCCAC 
350
TGAGCCCTCG GAAACTATAA ACCTTATAGA AGATTCCCAG AGAATCTCAA 
400
CTTCTCAAGA CCCAAAAATG AAAAAAGCCA AGAAACCCAG CAGAACGGAC 
450
AGGCACAGCA AGATCAAAAC GGCCAAAGGG ACACGAGATC GTAGGATGAG 
500
ACTCTCGCTA GATGTCGCCA AAGAGTTGTT TGGCTTACAA GACATGCTTG 
550
GATTTGACAA AGCCAGCAAA ACCGTTGAAT GGTTGCTTAC ACAAGCAAAA 
600
CCTGAGATCA TAAAGATCGC GACAACCCTT TCTCACCATG GCTGCTTCAG 
650
CAGCGGCGAT GAGTCTCATA TCCGATCCAT GGACACATCT TCTGATCTAT 
700
GTGAACTTGC ATCCATGTGG ACGGTCGACG ATAGAGGCAG CAATACTAAC 
750
ACGACCGAAA CAAGAGGAAA CAAGGTCGAT GGGAGATCGA TGAGAGGGAA 
800
GAGAAAGAGG CCAGAACCGC GAACGCCCAT TTTAAAGAAG TTGTCCAAGG 
850
AGGAGAGAGC GAAAGCTAGA GAAAGAGCAA AGGGTAGAAC AATGGAGAAA 
900
ATGATGATGA AGATGAAAGG AAGATCACAA TTAGTGAAAG TTGTGGAAGA 
950
AGACGCTCAT GATCATGGTG AGATAATAAA GAATAATAAT AGAAGCCAAG 
1000
TGAATCGGAG TTCTTTTGAG ATGACACACT GCGAAGACAA GATCGAAGAA 
1050
CTTTGCAAGA ACGATCGTTT TGCAGTTTGC AACGAATTTA TCATGAATAA 
1100
GAAAGATCAC ATTTCAAATG AATCTTATGA CTTAGTCAAC TACAAACCGA 
1150
ACTCATCATT CCCAGTGATT AACCACCATC GCAGCCAAGG AGCAGCTAAT 
1200
TCCATTGAGC AGCATCAGTT TACGGATCTT CATTACTCCT TCGGCGCGAA 
1250
ACCAAGAGAC CTCATGCACA ACTATCAAAA CATGTATTGA 
1300

>AT3G18550.2 longest ORF length:429
MNNNIFSTTT TINDDYMLFP YNDHYSSQPL LPFSPSSSIN DILIHSTSNT 
50
SNNHLDHHHQ FQQPSPFSHF EFAPDCALLT SFHPENNGHD DNQTIPNDNH 
100
HPSLHFPLNN TIVEQPTEPS ETINLIEDSQ RISTSQDPKM KKAKKPSRTD 
150
RHSKIKTAKG TRDRRMRLSL DVAKELFGLQ DMLGFDKASK TVEWLLTQAK 
200
PEIIKIATTL SHHGCFSSGD ESHIRSMDTS SDLCELASMW TVDDRGSNTN 
250
TTETRGNKVD GRSMRGKRKR PEPRTPILKK LSKEERAKAR ERAKGRTMEK 
300
MMMKMKGRSQ LVKVVEEDAH DHGEIIKNNN RSQVNRSSFE MTHCEDKIEE 
350
LCKNDRFAVC NEFIMNKKDH ISNESYDLVN YKPNSSFPVI NHHRSQGAAN 
400
SIEQHQFTDL HYSFGAKPRD LMHNYQNMY
450