fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G18640 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)

>AT3G18640.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NotI, PacI, PstI, SacI, SalI, SmaI, XbaI
Name Recognition sequence Cut positions
EcoRI G|AATTC 370
HindIII A|AGCTT 959, 1981
NdeI CA|TATG 2003
NheI G|CTAGC 1218, 1651
PvuII CAG|CTG 1438
SpeI A|CTAGT 790
StyI C|C[AT][AT]GG 1619
XhoI C|TCGAG 1022


Click here to view TAIR data

>AT3G18640.1 length:2031
ATGGAAATGA GTGGTCTGGG AAGAAAACGT GTTTCAAAGT GGGACTCTAA 
50
GGAAGACACA CACCATCATC ATTCTAGCGT AAATGCAAAC TCGGCTTCTT 
100
ATTACCGCGA CAAAGAGTCT GAGCCTGTCC GGTTCAATGC AGAGAGTAAC 
150
GGTGAAGCTA GGACTAGAAG CAGAGTTTCA CAGAATAACG ATAACAGTTA 
200
TTTTTCTGAA CAAGATGGTA CTAGGCAACA GTTTGTCCGT AGGAGTGGAA 
250
GTAGAAGTAA TAGCAGGAGT AGAAGCCGTA GTAGAAGCCC AGTCTATAGA 
300
GCTAGACGAG ACGCGGGATC TTATGACAGA CACAAGACGA GAACACAAGT 
350
TTCTCCTACG CCAATCAGAG AATTCAATAA GAGAGGCAGT GATCATTTGT 
400
TTGATCAAAG CAGAAGTGAT CATTATGGTT GGGAAGATAA CATTAGAAAG 
450
CCGAGGGAGA CCAAATATCA CACCGATGAT TTCAGAGAAG AGGCAATGAT 
500
GGAAGGTGCA AGGTCTTCTG ACTATAATAA TACTGATTAT CCCGAGGATA 
550
ATTCGAGAAT AAGAAGGCGA AGAAGCGAGT TTACGGGAGA GAAGGAAACA 
600
CAAAGAAGGG ATGGTGGTGA TGGTGAAGGA GGATTCCACA GGAGTTCGAA 
650
TATTCCGTGT AAGTTTTTCG CTGCGGGGAC GGGGTTCTGT CGTAATGGCA 
700
AGTATTGCAG GTTTTCTCAT CATGTTGCTG ATAGAAAACA GCCTCAAGAC 
750
AACAACAACA ACTTTTATAG ACAGGACAAT AACAATCATA CTAGTGGTCA 
800
TAATAAATGG AATGATGTTG AAAGATTGGA CAATGGAAGA GTAGGCGGAA 
850
TCGAAGTTTC TCGTGCCAGT AAGAAGGGAG TTTCTGAATC TAAAGGGAAT 
900
GGTAGTAGTA GCTGGATTGA TGACATGGAG ATGTCTCCTG ATTGGAATTA 
950
TGGAGTCCAA GCTTTAAAGA AGCCTGTGAA GGAAGACCAT AGTGTTGGTA 
1000
TTATTGGTCA GAGTTCACAA TCTCGAGTTC TTAAAGATGA TCAGAGGAGT 
1050
AGTGGTATGT TTTCACATGG TGGCAGAACT ATGGCTGAGA AACCTGTAGC 
1100
TGCTTCACAT CAGAGTTACA GTAATTCAGT GAATGTTGCG CCAGTTGAAA 
1150
CATTCAATCA GAATCATAAT GCATTACCGT ACCAAAGCTC ACTAACTGCT 
1200
GGAGGAAGTC AACAAGTGCT AGCTGCTGCT GCTACAAATT TCTCAGTAGG 
1250
CTCCAACTTG AGCAATCTTG AGAGTGGAAA AGTTTATCAA GATAATCATC 
1300
ACTCAACTGT GGAGAAACCT GTTTTGGTCC AAAATACAGT AAGTAGGGAA 
1350
CAAATCGATC AGATTACTAA CATCTCAGCA TCTCTAGCGC AGTTTCTTGC 
1400
AAATGGTCAG CCCATTCCAC AGCTTGAACA GGCATTGCAG CTGCCTCTGC 
1450
ATTCAGAATC TGTTCAACCA AATCAGGCTA CTACTCAAAG TAATGTAGTG 
1500
AGTAGTAATC CAAATCAGCT ATGGGGATTA GGGATGAGCA CTGGCGCTGA 
1550
AGGAGTCCCC GCGGTTACTG CATCAAAGAT AAGCAATGTC GAAGAGATTC 
1600
AAGAAGTATC GCTAGATCCC AAGGAAAACG GGGACAAAAA GACTGATGAA 
1650
GCTAGCAAGG AAGAAGAGGG TAAGAAAACT GGAGAAGACA CTAATGATGC 
1700
TGAGAATGTC GTGGATGAAG ATGAAGATGG TGATGATGAT GGGAGCGACG 
1750
AAGAGAACAA GAAAGAGAAA GACCCGAAAG GAATGCGGGC GTTTAAGTTT 
1800
GCTTTAGTTG AGGTTGTAAA AGAGCTTTTA AAACCAGCTT GGAAAGAAGG 
1850
TAAGCTGAAC AAAGATGGTT ACAAAAACAT AGTGAAGAAG GTAGCTGAGA 
1900
AAGTGACTGG TACAATGCAA AGTGGAAACG TTCCTCAAAC ACAGGAGAAG 
1950
ATTGACCATT ATCTATCCGC TTCGAAACCA AAGCTTACCA AGCTCGTTCA 
2000
GGCATATGTC GGCAAAATCA AGAAGACCTA A
2050

>AT3G18640.1 longest ORF length:676
MEMSGLGRKR VSKWDSKEDT HHHHSSVNAN SASYYRDKES EPVRFNAESN 
50
GEARTRSRVS QNNDNSYFSE QDGTRQQFVR RSGSRSNSRS RSRSRSPVYR 
100
ARRDAGSYDR HKTRTQVSPT PIREFNKRGS DHLFDQSRSD HYGWEDNIRK 
150
PRETKYHTDD FREEAMMEGA RSSDYNNTDY PEDNSRIRRR RSEFTGEKET 
200
QRRDGGDGEG GFHRSSNIPC KFFAAGTGFC RNGKYCRFSH HVADRKQPQD 
250
NNNNFYRQDN NNHTSGHNKW NDVERLDNGR VGGIEVSRAS KKGVSESKGN 
300
GSSSWIDDME MSPDWNYGVQ ALKKPVKEDH SVGIIGQSSQ SRVLKDDQRS 
350
SGMFSHGGRT MAEKPVAASH QSYSNSVNVA PVETFNQNHN ALPYQSSLTA 
400
GGSQQVLAAA ATNFSVGSNL SNLESGKVYQ DNHHSTVEKP VLVQNTVSRE 
450
QIDQITNISA SLAQFLANGQ PIPQLEQALQ LPLHSESVQP NQATTQSNVV 
500
SSNPNQLWGL GMSTGAEGVP AVTASKISNV EEIQEVSLDP KENGDKKTDE 
550
ASKEEEGKKT GEDTNDAENV VDEDEDGDDD GSDEENKKEK DPKGMRAFKF 
600
ALVEVVKELL KPAWKEGKLN KDGYKNIVKK VAEKVTGTMQ SGNVPQTQEK 
650
IDHYLSASKP KLTKLVQAYV GKIKKT
700