fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G19360 Zinc finger (CCCH-type) family protein (.1)

>AT3G19360.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 559
KpnI GGTAC|C 762, 966
SacI GAGCT|C 669
SalI G|TCGAC 1137
StyI C|C[AT][AT]GG 253


Click here to view TAIR data

>AT3G19360.1 length:1161
ATGGATTCGA GTTACTCTGA TTCTCGTCCC ATGTTCGTGC AATCACCTTA 
50
TGGTGGTTGG AATCAAACAC AGATGATTGA TTCAATGGCT AATCCAATGA 
100
ACAATGAACA AGGAGACTTG CATTCACTAT CTGAATCACA ATCACAATCT 
150
CAACCGTCTC AGCAATTACA GCCTGCATTG AAAAGGCCTA GACTTGTTGA 
200
TGATAACTTG TTTAATCCTG CTTCGTCGTT TCCTCAGCCT TCGAGTAGCA 
250
ATCCTTGGAT GGTTCCATCT TTGAACCCTC CTCCTGTGAA CAAAGGGACT 
300
GCTAATATAT TCTATAAGAC TAGAATGTGT GCTAAATTCA GGGCAGGGAC 
350
TTGTAGGAAT GGTGAACTCT GTAATTTTGC TCATGGGATT GAGGATTTGA 
400
GGCAGCCTCC GTCGAATTGG CAGGAAATTG TTGGACCTCC TCCTGCTGGT 
450
CAAGACAGGG AGAGGGAGAG AGAGAGGGAA AGGGAGAGGG AAAGACCGTC 
500
TTTGGCGCCT GTTGTGAATA ATAATTGGGA AGATGATCAG AAGATAATCT 
550
TGAGGATGAA GCTTTGTAGG AAGTTTTGTT TTGGGGAAGA GTGTCCTTAT 
600
GGGGACAGGT GCAATTTTAT TCATGAGGAT CTGTCAAAGT TTCGTGAGGA 
650
CTCGGGGAAG TTGAGAGAGA GCTCGGTTAT AAGTGTTGGT GCTACTGCTG 
700
CTGATCAACC ATCTGATACT GCTTCTAATC TTATTGAAGT AAATAGACAA 
750
GGAAGCATCC CGGTACCTGC ACCTATGAAC AATGGTGGTG TTGTCAAGAC 
800
TGTGTACTGG AAGACGAGGT TGTGCATGAA GTTTGACATC ACGGGTCAAT 
850
GTCCTTTTGG CGATAAGTGT CACTTTGCTC ATGGCCAAGC AGAGTTGCAT 
900
AACTCTGTTG GAAGGGTAGA AGGAGAAGCT ATGAACGCGG TAGCGTCTGT 
950
GAATAAACAA GCAGTGGTAC CTGCGAATGA AGCATTTGCA ATGAAACCGA 
1000
TTACACAAGT AACAGCAGAT TCCTCTGGTC TGAATGAAGA AGGGCGGCGA 
1050
AAGAAGTGTT TGCTCAAGTG GAGCGACTCC AAGAAGATTA ACCGAATATA 
1100
TGGAGACTGG ATCGATGATT TACCGGTGGG TCAAAAGTCG ACAAAGCCAG 
1150
TAGAGAGTTG A
1200

>AT3G19360.1 longest ORF length:386
MDSSYSDSRP MFVQSPYGGW NQTQMIDSMA NPMNNEQGDL HSLSESQSQS 
50
QPSQQLQPAL KRPRLVDDNL FNPASSFPQP SSSNPWMVPS LNPPPVNKGT 
100
ANIFYKTRMC AKFRAGTCRN GELCNFAHGI EDLRQPPSNW QEIVGPPPAG 
150
QDRERERERE RERERPSLAP VVNNNWEDDQ KIILRMKLCR KFCFGEECPY 
200
GDRCNFIHED LSKFREDSGK LRESSVISVG ATAADQPSDT ASNLIEVNRQ 
250
GSIPVPAPMN NGGVVKTVYW KTRLCMKFDI TGQCPFGDKC HFAHGQAELH 
300
NSVGRVEGEA MNAVASVNKQ AVVPANEAFA MKPITQVTAD SSGLNEEGRR 
350
KKCLLKWSDS KKINRIYGDW IDDLPVGQKS TKPVES
400