fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G20310 ATERF7, ATERF-7 ethylene response factor 7 (.1)

>AT3G20310.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, DraI, DraIII, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, N.BstNBI, , NarI, NciI, NcoI, NdeI, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, SacI, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 188, 475
AccIII(BspMII) T|CCGGA 549
AciI C|CGC 33, 48, 171, 201, 474, 625, 662
AgeI A|CCGGT 540
AluI AG|CT 115, 544
AvaII G|G[AT]CC 30, 222, 350, 456
BglI GCCNNNN|NGGC 480
BsaAI PyAC|GTPu 209
BsaHI GPu|CGPyC 483
BsaJI C|CNNGG 73, 100, 219, 476
BsaWI [AT]|CCGG[AT] 318, 540, 549
BsiEI CGPuPy|CG 248, 412
BslI CCNNNNN|NNGG 668
BspDI AT|CGAT 250, 337
BspEI T|CCGGA 549
BsrFI Pu|CCGGPy 52, 414, 540
BssKI |CCNGG 380
BssSI C|TCGTG 146
BstF5I GGATGNN| 673
BstNI CC|[AT]GG 380
BstUI CG|CG 188, 475
BstYI Pu|GATCPy 58, 122
BtgI C|CPuPyGG 219, 476
Cac8I GCN|NGC 187, 414, 691
Cfr10I [AG]|CCGG[TC] 52, 414, 540
ClaI AT|CGAT 250, 337
DdeI C|TNAG 118
DpnI GA-CH3|TC 57, 121, 128, 247, 334, 338, 650, 704, 719
DpnII |GATC 57, 121, 128, 247, 334, 338, 650, 704, 719
DrdI GACNNNN|NNGTC 104
EaeI Py|GGCCPu 412
EagI C|GGCCG 412
EcoRV GAT|ATC 524, 607
Fnu4HI GC|NGC 114, 183, 204, 386, 392, 424, 433, 474, 480
HaeIII GG|CC 229, 411
HhaI GCG|C 189
HinP1I G|CGC 189
HincII GTPy|PuAC 679
HinfI G|ANTC 109, 168, 323, 573
HpaII C|CGG 51, 317, 413, 539, 548, 628
Hpy188I TCN|GA 326, 527, 730
Hpy99I CG[AT]CG| 23, 490, 580, 596
HpyCH4III ACN|GT 438, 503, 712
HpyCH4IV A|CGT 208, 724
HpyCH4V TG|CA 184
MboI |GATC 57, 121, 128, 247, 334, 338, 650, 704, 719
MseI T|TAA 134, 441, 516, 654
MspA1I C[AC]G|C[GT]G 116, 476
MspI C|CGG 51, 317, 413, 539, 548, 628
MwoI GCNNNNN|NNGC 180, 392, 430, 480
NaeI GCC|GGC 414
NgoMIV G|CCGGC 414
NlaIII CATG| 427, 509
NlaIV GGN|NCC 31, 69
NspI PuCATG|Py 510
PspGI |CC[AT]GG 380
PvuI CGAT|CG 248
PvuII CAG|CTG 116
RsaI GT|AC 159, 714
RsrII CG|G[AT]CCG 457
SacII CCGC|GG 476
Sau3AI |GATC 57, 121, 128, 247, 334, 338, 650, 704, 719
Sau96I G|GNCC 30, 222, 350, 456
ScrFI CC|NGG 380
SgrAI CPu|CCGGPyG 53
StyI C|C[AT][AT]GG 100
Taqƒ¿I T|CGA 106, 165, 249, 336
TfiI G|A[AT]TC 109, 168, 323, 573
TseI G|C[AT]GC 114, 183, 386, 392, 424, 433
Tsp509I |AATT 239, 374, 656
TspRI NNCA[CG]TGNN| 713


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>AT3G20310.1 length:735
ATGAGGAAAG GGAGAGGCTC TTCCGTCGTT GGACCCGCCC TTCCAGTAAC 
50
CGCCGGTGGA TCTGTGAAGG AGCCGAGGTA TAGAGGCGTT AGGAAGAGAC 
100
CTTGGGGTCG ATTCGCAGCT GAGATCCGTG ATCCATTAAA AAAATCTCGT 
150
GTCTGGCTCG GTACTTTCGA TTCCGCCGTA GATGCTGCAC GCGCTTACGA 
200
TACCGCCGCA CGTAACCTCC GTGGTCCAAA GGCCAAGACC AATTTCCCGA 
250
TCGATTGTTC TCCTTCTTCT CCTCTCCAAC CTCTCACCTA CCTCCACAAT 
300
CAAAACCTCT GTTCTCCTCC GGTGATTCAG AACCAGATCG ATCCGTTTAT 
350
GGACCATCGG TTATACGGCG GAGGTAATTT CCAGGAGCAG CAGCAGCAGC 
400
AGATTATTAG TCGGCCGGCG AGTAGCAGCA TGAGCAGCAC CGTTAAATCT 
450
TGTAGCGGAC CGAGACCGAT GGAAGCCGCG GCGGCGTCTT CGTCGGTGGC 
500
GAAACCGTTA CATGCGATTA AGAGATATCC GAGAACTCCA CCGGTAGCTC 
550
CGGAGGATTG TCATAGCGAC TGCGATTCTT CGTCGTCTGT TATTGACGAC 
600
GGAGATGATA TCGCATCTTC GTCTTCCCGC CGGAAAACGC CGTTTCAGTT 
650
TGATCTTAAT TTCCCGCCGT TGGATGGCGT TGACTTATTC GCTGGCGGGA 
700
TAGATGATCT CCACTGTACC GATCTACGTC TCTGA
750

>AT3G20310.1 longest ORF length:244
MRKGRGSSVV GPALPVTAGG SVKEPRYRGV RKRPWGRFAA EIRDPLKKSR 
50
VWLGTFDSAV DAARAYDTAA RNLRGPKAKT NFPIDCSPSS PLQPLTYLHN 
100
QNLCSPPVIQ NQIDPFMDHR LYGGGNFQEQ QQQQIISRPA SSSMSSTVKS 
150
CSGPRPMEAA AASSSVAKPL HAIKRYPRTP PVAPEDCHSD CDSSSSVIDD 
200
GDDIASSSSR RKTPFQFDLN FPPLDGVDLF AGGIDDLHCT DLRL
250