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| Locus | Common name | Short description |
| AT3G20840 | PLT1 | PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) |
>AT3G20840.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AclI, AfeI, AflIII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstYI, BstZ17I, Bsu36I, BtrI, DraI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NgoMIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PleI, PmeI, PmlI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Tth111I, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 424 |
| AccII(FnuDII) | CG|CG | 1130 |
| AciI | C|CGC | 405 |
| AflII | C|TTAAG | 703 |
| AgeI | A|CCGGT | 1028 |
| AluI | AG|CT | 232, 269, 310, 341, 351, 430, 694, 964, 976, 1084, 1102, 1108, 1218, 1340, 1419, 1520, 1571 |
| AlwNI | CAGNNN|CTG | 1193 |
| ApoI | Pu|AATTPy | 3 |
| AvaI | C|PyCGPuG | 1182 |
| AvaII | G|G[AT]CC | 400, 714, 1567, 1663 |
| BclI | T|GATCA | 128 |
| BfaI | C|TAG | 227, 279, 462, 476, 624, 692, 1049, 1512 |
| BsaJI | C|CNNGG | 72, 395, 452, 1152, 1551, 1592, 1692 |
| BsaWI | [AT]|CCGG[AT] | 204, 1028, 1645 |
| BsiEI | CGPuPy|CG | 900, 1589 |
| BsiHKAI | G[AT]GC[AT]|C | 365, 473, 1185 |
| BslI | CCNNNNN|NNGG | 77, 141, 811, 929, 1074 |
| BsoBI | C|PyCGPuG | 1182 |
| Bsp1286I | G[GAT]GC[CAT]|C | 365, 473, 1185 |
| BspDI | AT|CGAT | 563 |
| BspHI | T|CATGA | 60, 348 |
| BsrFI | Pu|CCGGPy | 1028 |
| BsrI | ACTGGN| | 14, 571, 710 |
| BssKI | |CCNGG | 451, 1692 |
| BstNI | CC|[AT]GG | 1692 |
| BstUI | CG|CG | 1130 |
| BstXI | CCANNNNN|NTGG | 1173, 1557 |
| BtgI | C|CPuPyGG | 395, 1551 |
| BtsI | GCAGTGNN| | 1008 |
| Cac8I | GCN|NGC | 463, 888 |
| Cfr10I | [AG]|CCGG[TC] | 1028 |
| ClaI | AT|CGAT | 563 |
| DdeI | C|TNAG | 245, 946, 1236, 1414 |
| DpnI | GA-CH3|TC | 127, 538, 681, 689, 895, 1021, 1584 |
| DpnII | |GATC | 127, 538, 681, 689, 895, 1021, 1584 |
| DraIII | CACNNN|GTG | 140, 1710 |
| DrdI | GACNNNN|NNGTC | 1671 |
| EaeI | Py|GGCCPu | 179, 494, 900 |
| EagI | C|GGCCG | 900 |
| EcoO109I | PuG|GNCCPy | 715 |
| EcoRI | G|AATTC | 3 |
| Fnu4HI | GC|NGC | 309, 675, 696, 801, 957, 978, 1083, 1391, 1418, 1533 |
| HaeII | PuGCGC|Py | 838 |
| HaeIII | GG|CC | 178, 493, 617, 899 |
| HhaI | GCG|C | 837, 1080 |
| HinP1I | G|CGC | 837, 1080 |
| HincII | GTPy|PuAC | 1486 |
| HindIII | A|AGCTT | 431, 965 |
| HinfI | G|ANTC | 243, 318, 904, 1116, 1317, 1671 |
| HpaII | C|CGG | 203, 450, 909, 1027, 1448, 1644 |
| Hpy188I | TCN|GA | 246, 441, 523, 1072, 1274 |
| Hpy99I | CG[AT]CG| | 1034 |
| HpyCH4III | ACN|GT | 139, 337, 377, 1171, 1397, 1552, 1578, 1605 |
| HpyCH4IV | A|CGT | 505, 1035 |
| HpyCH4V | TG|CA | 508, 697, 979, 1003, 1389, 1531 |
| MboI | |GATC | 127, 538, 681, 689, 895, 1021, 1584 |
| MseI | T|TAA | 702, 999, 1329, 1608 |
| MslI | CAPyNN|NNPuTG | 117, 875 |
| MspA1I | C[AC]G|C[GT]G | 407 |
| MspI | C|CGG | 203, 450, 909, 1027, 1448, 1644 |
| MwoI | GCNNNNN|NNGC | 82, 963 |
| N.BstNBI | GAGTCNNNN|N | 909, 1121, 1676 |
| NciI | CC|[CG]GG | 451 |
| NcoI | C|CATGG | 395 |
| NdeI | CA|TATG | 91, 686 |
| NheI | G|CTAGC | 463 |
| NlaIII | CATG| | 59, 347, 394, 778, 875, 1460 |
| NlaIV | GGN|NCC | 168, 400, 714, 1198, 1547, 1567, 1642 |
| PaeR7I | C|TCGAG | 1182 |
| PflMI | CCANNNN|NTGG | 141 |
| PpuMI | PuG|G[AT]CCPy | 715 |
| PspGI | |CC[AT]GG | 1692 |
| PstI | CTGCA|G | 1532 |
| RsaI | GT|AC | 706, 1030, 1168 |
| Sau3AI | |GATC | 127, 538, 681, 689, 895, 1021, 1584 |
| Sau96I | G|GNCC | 400, 714, 1567, 1663 |
| ScaI | AGT|ACT | 707 |
| ScrFI | CC|NGG | 451, 1692 |
| SfcI | C|TPuPyAG | 376, 1532 |
| SmlI | C|TPyPuAG | 703, 1106, 1114, 1182 |
| StyI | C|C[AT][AT]GG | 72, 395, 1152 |
| Taqƒ¿I | T|CGA | 536, 562, 574, 830, 842, 850, 1017, 1181, 1400, 1574, 1586 |
| TfiI | G|A[AT]TC | 1317 |
| TliI | C|TCGAG | 1182 |
| TseI | G|C[AT]GC | 309, 675, 696, 801, 957, 978, 1083, 1391, 1418, 1533 |
| Tsp45I | |GT[CG]AC | 316, 380, 552, 1008 |
| Tsp509I | |AATT | 2, 731, 1382 |
| TspRI | NNCA[CG]TGNN| | 946, 1008, 1531, 1636, 1669 |
| XbaI | T|CTAGA | 1050 |
| XcmI | CCANNNNN|NNNNTGG | 1176 |
| XhoI | C|TCGAG | 1182 |
Click here to view TAIR data
>AT3G20840.1 length:1725
ATGAATTCTA ACAACTGGCT TGGCTTTCCT CTTTCACCGA ACAACTCTTC | 50 |
TTTGCCTCCT CATGAATACA ACCTTGGCTT GGTCAGCGAC CATATGGACA | 100 |
ACCCTTTTCA AACACAAGAG TGGAATATGA TCAATCCACA CGGTGGAGGA | 150 |
GGAGATGAAG GAGGAGAGGT TCCAAAAGTG GCCGATTTTC TCGGTGTGAG | 200 |
CAAACCGGAC GAAAACCAAT CCAACCACCT AGTAGCTTAC AACGACTCAG | 250 |
ACTACTACTT CCATACCAAT AGCTTGATGC CTAGCGTCCA ATCAAACGAT | 300 |
GTCGTTGTAG CAGCTTGTGA CTCCAATACT CCTAACAACA GTAGCTATCA | 350 |
TGAGCTTCAA GAGAGTGCTC ACAATCTACA GTCACTTACT TTGTCCATGG | 400 |
GGACCACCGC TGGTAATAAT GTTGTAGACA AAGCTTCACC ATCCGAGACC | 450 |
ACCGGGGATA ACGCTAGCGG TGGAGCACTA GCCGTTGTTG AGACGGCCAC | 500 |
GCCAAGACGT GCATTGGACA CTTTCGGACA ACGAACCTCG ATCTATCGTG | 550 |
GTGTCACAAG ACATCGATGG ACTGGTCGAT ATGAGGCTCA TCTATGGGAT | 600 |
AATAGTTGTA GAAGGGAAGG CCAGTCTAGG AAAGGAAGAC AAGTTTACTT | 650 |
GGGTGGATAT GACAAAGAAG ATAAAGCAGC AAGATCATAT GATCTAGCTG | 700 |
CACTTAAGTA CTGGGGTCCT TCAACTACTA CTAATTTCCC CATTACAAAC | 750 |
TACGAGAAAG AAGTAGAGGA AATGAAGCAC ATGACGAGAC AAGAGTTCGT | 800 |
GGCTGCCATT AGAAGGAAAA GTAGTGGATT TTCGAGAGGC GCTTCGATGT | 850 |
ATCGAGGAGT TACAAGGCAT CACCAACATG GAAGATGGCA AGCAAGGATC | 900 |
GGCCGAGTCG CCGGAAACAA AGACCTCTAC TTGGGAACTT TTAGCACTGA | 950 |
GGAAGAAGCA GCAGAAGCTT ACGATATAGC TGCAATAAAG TTTAGAGGAC | 1000 |
TTAATGCAGT GACCAACTTC GAGATCAACC GGTACGACGT GAAAGCCATT | 1050 |
CTAGAGAGTA GCACTCTTCC CATCGGAGGA GGCGCAGCTA AACGGCTCAA | 1100 |
AGAAGCTCAA GCTCTTGAGT CTTCAAGGAA ACGCGAGGCG GAGATGATAG | 1150 |
CCCTTGGTTC AAGTTTCCAG TACGGTGGTG GCTCGAGCAC AGGCTCTGGC | 1200 |
TCCACCTCAT CAAGACTTCA GCTTCAACCT TACCCTCTAA GCATTCAACA | 1250 |
ACCATTAGAG CCTTTTCTAT CTCTTCAGAA CAATGACATC TCTCATTACA | 1300 |
ACAACAACAA TGCTCACGAT TCCTCCTCTT TTAATCACCA TAGCTATATC | 1350 |
CAGACACAAC TTCATCTCCA CCAACAGACC AACAATTACT TGCAGCAACA | 1400 |
GTCGAGCCAG AACTCTCAGC AGCTCTACAA TGCGTATCTT CATAGCAATC | 1450 |
CGGCTCTGCT TCATGGACTT GTCTCTACCT CTATCGTTGA CAACAATAAT | 1500 |
AACAATGGAG GCTCTAGTGG GAGCTACAAC ACTGCAGCAT TTCTTGGGAA | 1550 |
CCACGGTATT GGTATTGGGT CCAGCTCGAC TGTTGGATCG ACCGAGGAGT | 1600 |
TTCCAACCGT TAAAACAGAT TACGATATGC CTTCCAGTGA TGGAACCGGA | 1650 |
GGGTATAGTG GTTGGACCAG TGAGTCTGTT CAGGGGTCAA ACCCTGGTGG | 1700 |
TGTTTTCACT ATGTGGAATG AGTAA | 1750 |
>AT3G20840.1 longest ORF length:574
MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG | 50 |
GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND | 100 |
VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET | 150 |
TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD | 200 |
NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN | 250 |
YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI | 300 |
GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI | 350 |
LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG | 400 |
STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI | 450 |
QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN | 500 |
NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG | 550 |
GYSGWTSESV QGSNPGGVFT MWNE | 600 |