fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G20880 WIP4 WIP domain protein 4 (.1)

>AT3G20880.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 725
EcoRV GAT|ATC 141
StyI C|C[AT][AT]GG 946
XbaI T|CTAGA 135


Click here to view TAIR data

>AT3G20880.1 length:1239
ATGCTATTTT CCACTGTTTT GTCACATCGC ACCTTATATA TACTCACATG 
50
TCCTAATACA CTCATACACT CATACACACA CCCACATATA CATGCATATC 
100
TAGCTTTCAC TGGTTTCTTA ACACAACTCC ATCATCTAGA GATATCTTGC 
150
CTTCTTCTTC TTTTTTTCTC ACTATCTTCT CTCCTAAAGT TAATGGCTGA 
200
TCCAGATTGT ATCTTCAGAA ATGGATATGT AGACTACTAT AACTATAGCT 
250
TCAACTATGC CACTTCCCTC TCACGCATCT ACAACTCTCA TGACAGCTTT 
300
TATTATCCTC ACCAGACGAC AAACCCAAAC ATCAACGAAA ACCCTAATTT 
350
GACTTCACCT GACTCTCCTC CACTTAGAGA AGCCCTCCCT CTCCTTAGCT 
400
TAAGCCCCAT TCATAAGCAT CAAGAACCTA CTGCTAACCA CCATGAGTAC 
450
TATTTCATGG AGACGACAGA AACTTCCTCT AATTCAAACT TTCTTGATCA 
500
ATGCCAAGAC AGTTATCGTC ATGATGTAAC CGTGGATCTT CATCTAGGGT 
550
TACCAAACCT CGGTGATGGT GGAAGCAGCA GCAGCGATGT GGTCCTTGAT 
600
TCCACCGACC ACCAAGAGGG TCACCATGAT CATCATCAAG ATCAAGGACT 
650
TGAAGTTACT ATGGCTTCTG ACCATGATGA TGAACATGGT GGCTTACAAA 
700
GGGGTAATCA TCTTCATCAC TTTTGGATCC CGACTCCTTC TCAGATTCTG 
750
ATGGGTCCAA CACAGTTCTC TTGTCCTCTA TGCTTCAAGA CTTTCAACAG 
800
ATACAACAAC ATGCAAATGC ACATGTGGGG ACATGGTTCA CAATACAGAA 
850
AAGGACCGGA GTCGCTGAGA GGGACACAAC CAACGGCGAT GCTGAAGCTG 
900
CCTTGCTACT GCTGTGCACC GGGCTGCAAG AACAACATAG ACCACCCAAG 
950
GGCTAGGCCG CTCAAGGACT TCCGTACGCT TCAGACACAT TACAAGCGGA 
1000
AGCACGGTGT GAGGCCCTTT GCTTGTCGTA GGTGTGGGAA GGCATTTGCG 
1050
GTCAAAGGAG ATTGGAGGAC TCACGAGAAG AACTGTGGGA AGCTATGGTA 
1100
TTGCTCATGT GGGTCGGATT TTAAGCACAA GAGGTCACTT AAAGACCACG 
1150
TTAAGGCCTT TGGGAATGGT CATGTCCCTT GTTGTGGAAT TGATCATGAG 
1200
GAAGAGGAGG CTGCTTCTGA TGTCGAGCAG CAAGAATGA
1250

>AT3G20880.1 longest ORF length:412
MLFSTVLSHR TLYILTCPNT LIHSYTHPHI HAYLAFTGFL TQLHHLEISC 
50
LLLLFFSLSS LLKLMADPDC IFRNGYVDYY NYSFNYATSL SRIYNSHDSF 
100
YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY 
150
YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD 
200
STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL 
250
MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL 
300
PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA 
350
VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE 
400
EEEAASDVEQ QE
450