|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT3G21270 | ADOF2, AtDof3. 1 | DOF zinc finger protein 2 (.1) |
>AT3G21270.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AciI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DdeI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeIII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MwoI, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Taqƒ¿I, TfiI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccIII(BspMII) | T|CCGGA | 327 |
| AclI | AA|CGTT | 211 |
| AluI | AG|CT | 170, 434, 440, 465 |
| ApoI | Pu|AATTPy | 118 |
| AvaII | G|G[AT]CC | 577 |
| BamHI | G|GATCC | 6, 324, 330, 366 |
| BsaAI | PyAC|GTPu | 341 |
| BsaBI | GATNN|NNATC | 329, 365 |
| BsaJI | C|CNNGG | 574 |
| BsaWI | [AT]|CCGG[AT] | 327, 357 |
| BsiEI | CGPuPy|CG | 395 |
| BslI | CCNNNNN|NNGG | 222, 326, 525 |
| BspEI | T|CCGGA | 327 |
| BsrBI | GAG|CGG | 599 |
| BsrI | ACTGGN| | 185 |
| BssKI | |CCNGG | 320, 373, 519, 552 |
| BstEII | G|GTNACC | 401 |
| BstF5I | GGATGNN| | 378 |
| BstYI | Pu|GATCPy | 6, 324, 330, 366 |
| BtgI | C|CPuPyGG | 574 |
| DpnI | GA-CH3|TC | 5, 252, 323, 329, 335, 365, 394, 487, 512, 581 |
| DpnII | |GATC | 5, 252, 323, 329, 335, 365, 394, 487, 512, 581 |
| Fnu4HI | GC|NGC | 12, 196, 464 |
| HaeII | PuGCGC|Py | 199 |
| HhaI | GCG|C | 198 |
| HinP1I | G|CGC | 198 |
| HindIII | A|AGCTT | 435 |
| HinfI | G|ANTC | 102 |
| HpaII | C|CGG | 320, 326, 356, 373, 518, 551 |
| Hpy188I | TCN|GA | 368, 392 |
| Hpy99I | CG[AT]CG| | 177, 218 |
| HpyCH4III | ACN|GT | 62, 80, 292 |
| HpyCH4IV | A|CGT | 210, 340, 408 |
| HpyCH4V | TG|CA | 0, 67, 164, 462 |
| MboI | |GATC | 5, 252, 323, 329, 335, 365, 394, 487, 512, 581 |
| MseI | T|TAA | 83 |
| MspI | C|CGG | 320, 326, 356, 373, 518, 551 |
| NciI | CC|[CG]GG | 320, 373, 519, 552 |
| NcoI | C|CATGG | 574 |
| NlaIII | CATG| | 490, 573 |
| NlaIV | GGN|NCC | 6, 324, 330, 366 |
| PvuI | CGAT|CG | 395 |
| Sau3AI | |GATC | 5, 252, 323, 329, 335, 365, 394, 487, 512, 581 |
| Sau96I | G|GNCC | 577 |
| ScrFI | CC|NGG | 320, 373, 519, 552 |
| StyI | C|C[AT][AT]GG | 574 |
| TseI | G|C[AT]GC | 12, 464 |
| Tsp45I | |GT[CG]AC | 100, 157, 400 |
| Tsp509I | |AATT | 117, 344 |
Click here to view TAIR data
>AT3G21270.1 length:615
ATGCAGGATC CAGCAGCATA TTACCAGACG ATGATGGCGA AGCAACAACA | 50 |
ACAACAACAA CCACAGTTTG CAGAGCAAGA ACAGTTAAAG TGTCCTCGTT | 100 |
GTGACTCACC AAACACTAAA TTCTGTTACT ACAACAACTA CAATCTCTCA | 150 |
CAGCCTCGTC ACTTTTGCAA AAGCTGTCGT CGTTACTGGA CTAAAGGCGG | 200 |
CGCTCTCCGT AACGTTCCCG TCGGTGGTGG TTCTCGTAAG AACGCAACCA | 250 |
AACGATCCAC TTCTTCTTCT TCTTCTGCTT CCTCTCCTTC CAACAGTAGC | 300 |
CAAAACAAGA AGACGAAAAA CCCGGATCCG GATCCTGATC CACGTAATTC | 350 |
TCAAAAACCG GATTTGGATC CGACCCGGAT GCTTTACGGG TTTCCGATCG | 400 |
GTGACCAAGA CGTGAAGGGT ATGGAGATTG GTGGAAGCTT TAGCTCGTTG | 450 |
TTGGCGAATA ATATGCAGCT TGGTCTTGGA GGAGGAGGGA TCATGCTTGA | 500 |
CGGGTCGGGT TGGGATCATC CGGGTATGGG TTTGGGTTTG AGGAGAACCG | 550 |
AACCGGGTAA TAATAATAAT AACCCATGGA CCGATCTGGC TATGAACAGA | 600 |
GCGGAGAAAA ACTGA | 650 |
>AT3G21270.1 longest ORF length:204
MQDPAAYYQT MMAKQQQQQQ PQFAEQEQLK CPRCDSPNTK FCYYNNYNLS | 50 |
QPRHFCKSCR RYWTKGGALR NVPVGGGSRK NATKRSTSSS SSASSPSNSS | 100 |
QNKKTKNPDP DPDPRNSQKP DLDPTRMLYG FPIGDQDVKG MEIGGSFSSL | 150 |
LANNMQLGLG GGGIMLDGSG WDHPGMGLGL RRTEPGNNNN NPWTDLAMNR | 200 |
AEKN | 250 |