fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G21880 COL12 B-box type zinc finger protein with CCT domain (.1)

>AT3G21880.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 528
EcoRV GAT|ATC 488
KpnI GGTAC|C 417, 633
NcoI C|CATGG 413, 880
PvuII CAG|CTG 827
StyI C|C[AT][AT]GG 204, 413, 880
XbaI T|CTAGA 708


Click here to view TAIR data

>AT3G21880.1 length:1095
ATGGAGCCAA AGTGTGACCA TTGTGCAACC TCGCAAGCAT TGATTTACTG 
50
CAAATCCGAT TTGGCTAAAC TATGCCTAAA CTGCGACGTC CATGTACACT 
100
CTGCGAATCC TCTGTCTCAC AGGCACATAC GCTCTTTGAT CTGCGAGAAA 
150
TGCTTCTCAC AGCCAGCCGC AATCCGCTGT CTCGACGAGA AGGTTTCATA 
200
CTGCCAAGGA TGTCATTGGC ACGAAAGCAA CTGTTCGGAG TTAGGACACA 
250
GAGTTCAGAG CTTGAATCCT TTCTCTGGTT GTCCTTCTCC TACAGATTTT 
300
AACAGAATGT GGTCTTCAAT TCTTGAACCT CCTGTCTCCG GCTTGCTTAG 
350
TCCGTTCGTT GGTTCTTTTC CCTTGAATGA TCTCAACAAT ACCATGTTCG 
400
ATACCGCTTA TTCCATGGTA CCACACAACA TCAGTTACAC TCAGAATTTC 
450
AGTGATAATT TGTCTTTCTT TTCCACGGAA TCTAAGGGAT ATCCTGATAT 
500
GGTTCTTAAA CTTGAAGAAG GAGAAGAAGA TCTATGTGAA GGGCTTAACT 
550
TGGATGATGC ACCATTAAAC TTTGACGTAG GAGATGATAT TATCGGATGT 
600
TCATCAGAAG TACACATAGA ACCGGACCAT ACGGTACCAA ATTGCCTATT 
650
GATTGACAAG ACTAACACAT CCAGCTTTAC CGGCTCCAAC TTTACTGTAG 
700
ACAAGGCTCT AGAGGCATCG CCACCAGGTC AGCAAATGAA CATCAACACT 
750
GGACTTCAGC TTCCTCTATC ACCTGTCTTG TTCGGACAAA TCCATCCATC 
800
TCTTAACATC ACTGGTGAAA ACAATGCAGC TGATTACCAG GATTGTGGGA 
850
TGTCTCCAGG GTTTATAATG AGTGAAGCGC CATGGGAAAC GAATTTTGAA 
900
GTTAGTTGTC CACAAGCAAG AAACGAGGCT AAGTTGAGAT ACAAGGAGAA 
950
GAAATTAAAG CGCTCTTTTG GGAAACAGAT TCGATATGCA TCTCGCAAAG 
1000
CAAGAGCTGA CACGAGGAAA AGAGTGAAAG GAAGATTTGT GAAAGCTGGT 
1050
GACAGTTATG ATTATGATCC ATCATCACCG ACGACGAACA ATTGA
1100

>AT3G21880.1 longest ORF length:364
MEPKCDHCAT SQALIYCKSD LAKLCLNCDV HVHSANPLSH RHIRSLICEK 
50
CFSQPAAIRC LDEKVSYCQG CHWHESNCSE LGHRVQSLNP FSGCPSPTDF 
100
NRMWSSILEP PVSGLLSPFV GSFPLNDLNN TMFDTAYSMV PHNISYTQNF 
150
SDNLSFFSTE SKGYPDMVLK LEEGEEDLCE GLNLDDAPLN FDVGDDIIGC 
200
SSEVHIEPDH TVPNCLLIDK TNTSSFTGSN FTVDKALEAS PPGQQMNINT 
250
GLQLPLSPVL FGQIHPSLNI TGENNAADYQ DCGMSPGFIM SEAPWETNFE 
300
VSCPQARNEA KLRYKEKKLK RSFGKQIRYA SRKARADTRK RVKGRFVKAG 
350
DSYDYDPSSP TTNN
400