fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G23050 AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2)

>AT3G23050.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, HgaI, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MslI, MspA1I, , NarI, NdeI, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp509I, Tth111I, XbaI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AclI AA|CGTT 178, 650
AluI AG|CT 33, 437, 476, 537, 557, 575
BalI TGG|CCA 256, 464
BanII GPuGCPy|C 34
BglI GCCNNNN|NGGC 52, 87
BglII A|GATCT 724
BsaJI C|CNNGG 29, 51, 194, 389, 622
BsiHKAI G[AT]GC[AT]|C 34, 398, 503
Bsp1286I G[GAT]GC[CAT]|C 34, 398, 503
BspHI T|CATGA 524
BsrDI GCAATGNN| 702
BsrFI Pu|CCGGPy 370
BsrGI T|GTACA 431
BsrI ACTGGN| 599
BssKI |CCNGG 51, 340, 443
BstF5I GGATGNN| 254, 603
BstNI CC|[AT]GG 443
BstYI Pu|GATCPy 216, 447, 670, 724
BtgI C|CPuPyGG 29, 389, 622
BtsI GCAGTGNN| 331
Cac8I GCN|NGC 325, 370, 536
Cfr10I [AG]|CCGG[TC] 370
DdeI C|TNAG 223, 292, 408, 562
DpnI GA-CH3|TC 1, 125, 167, 215, 446, 669, 723
DpnII |GATC 1, 125, 167, 215, 446, 669, 723
EaeI Py|GGCCPu 6, 256, 464
Fnu4HI GC|NGC 55, 360
FspI TGC|GCA 656
HaeII PuGCGC|Py 58
HaeIII GG|CC 5, 25, 44, 255, 322, 337, 463
HhaI GCG|C 57, 655
HinP1I G|CGC 57, 655
HincII GTPy|PuAC 418
HinfI G|ANTC 74, 290, 545, 639
HpaII C|CGG 51, 339, 363, 369
Hpy188I TCN|GA 114, 407, 453, 561, 672, 692
HpyCH4III ACN|GT 120, 394
HpyCH4IV A|CGT 177, 649
HpyCH4V TG|CA 457, 644, 713
MboI |GATC 1, 125, 167, 215, 446, 669, 723
MscI TGG|CCA 256, 464
MseI T|TAA 210
MspI C|CGG 51, 339, 363, 369
MwoI GCNNNNN|NNGC 52, 87, 106, 321, 366, 696
N.BstNBI GAGTCNNNN|N 79, 644
NaeI GCC|GGC 370
NciI CC|[CG]GG 51, 340
NcoI C|CATGG 389, 622
NgoMIV G|CCGGC 370
NlaIII CATG| 130, 283, 388, 523, 621
NlaIV GGN|NCC 160, 367
NsiI ATGCA|T 458
PspGI |CC[AT]GG 443
RsaI GT|AC 430, 709
SacI GAGCT|C 34
Sau3AI |GATC 1, 125, 167, 215, 446, 669, 723
ScaI AGT|ACT 710
ScrFI CC|NGG 51, 340, 443
SfcI C|TPuPyAG 273
SmlI C|TPyPuAG 22, 424
StyI C|C[AT][AT]GG 194, 389, 622
Taqƒ¿I T|CGA 636
TfiI G|A[AT]TC 545
TseI G|C[AT]GC 360
Tsp45I |GT[CG]AC 595
TspRI NNCA[CG]TGNN| 331
XcmI CCANNNNN|NNNNTGG 92


Click here to view TAIR data

>AT3G23050.1 length:732
ATGATCGGCC AACTTATGAA CCTCAAGGCC ACGGAGCTCT GTCTCGGCCT 
50
CCCCGGCGGC GCTGAAGCAG TTGAGAGTCC TGCCAAATCG GCGGTGGGAA 
100
GCAAGAGAGG CTTCTCCGAA ACCGTTGATC TCATGCTCAA TCTTCAATCT 
150
AACAAAGAAG GCTCCGTTGA TCTCAAAAAC GTTTCTGCTG TTCCCAAGGA 
200
GAAGACTACC CTTAAAGATC CTTCTAAGCC TCCTGCTAAA GCACAAGTGG 
250
TGGGATGGCC ACCTGTGAGG AACTACAGGA AGAACATGAT GACTCAGCAG 
300
AAGACCAGTA GTGGTGCGGA GGAGGCCAGC AGTGAGAAGG CCGGGAACTT 
350
TGGTGGAGGA GCAGCCGGAG CCGGCTTGGT GAAGGTCTCC ATGGACGGTG 
400
CTCCATATCT GAGGAAAGTT GACCTCAAGA TGTACAAAAG CTACCAGGAT 
450
CTTTCTGATG CATTGGCCAA AATGTTCAGC TCCTTTACTA TGGGAAACTA 
500
TGGAGCACAA GGAATGATAG ATTTCATGAA CGAGAGCAAG CTAATGAATC 
550
TGCTGAATAG CTCTGAGTAT GTGCCAAGCT ACGAGGACAA AGATGGTGAC 
600
TGGATGCTCG TTGGCGATGT CCCATGGGAA ATGTTTGTCG AGTCTTGCAA 
650
ACGTTTGCGC ATTATGAAGG GATCTGAAGC AGTTGGACTT GCTCCGAGAG 
700
CAATGGAGAA GTACTGCAAG AACAGATCTT GA
750

>AT3G23050.1 longest ORF length:243
MIGQLMNLKA TELCLGLPGG AEAVESPAKS AVGSKRGFSE TVDLMLNLQS 
50
NKEGSVDLKN VSAVPKEKTT LKDPSKPPAK AQVVGWPPVR NYRKNMMTQQ 
100
KTSSGAEEAS SEKAGNFGGG AAGAGLVKVS MDGAPYLRKV DLKMYKSYQD 
150
LSDALAKMFS SFTMGNYGAQ GMIDFMNESK LMNLLNSSEY VPSYEDKDGD 
200
WMLVGDVPWE MFVESCKRLR IMKGSEAVGL APRAMEKYCK NRS
250