Locus |
Common name |
Short description |
AT3G23050 |
AXR2, IAA7 |
AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) |
>AT3G23050.2 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, , NarI, NdeI, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Taqƒ¿I, TliI, Tsp509I, Tth111I, XbaI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AclI
| AA|CGTT |
178 |
AluI
| AG|CT |
33, 437, 476, 537, 557, 575 |
BalI
| TGG|CCA |
256, 464 |
BanII
| GPuGCPy|C |
34 |
BglI
| GCCNNNN|NGGC |
52, 87 |
BsaJI
| C|CNNGG |
29, 51, 194, 389, 622 |
BsiHKAI
| G[AT]GC[AT]|C |
34, 398, 503 |
Bsp1286I
| G[GAT]GC[CAT]|C |
34, 398, 503 |
BspHI
| T|CATGA |
524 |
BsrFI
| Pu|CCGGPy |
370 |
BsrGI
| T|GTACA |
431 |
BsrI
| ACTGGN| |
599 |
BssKI
| |CCNGG |
51, 340, 443 |
BstF5I
| GGATGNN| |
254, 603 |
BstNI
| CC|[AT]GG |
443 |
BstYI
| Pu|GATCPy |
216, 447 |
BtgI
| C|CPuPyGG |
29, 389, 622 |
BtsI
| GCAGTGNN| |
331 |
Cac8I
| GCN|NGC |
325, 370, 536 |
Cfr10I
| [AG]|CCGG[TC] |
370 |
DdeI
| C|TNAG |
223, 292, 408, 562 |
DpnI
| GA-CH3|TC |
1, 125, 167, 215, 446 |
DpnII
| |GATC |
1, 125, 167, 215, 446 |
EaeI
| Py|GGCCPu |
6, 256, 464 |
Fnu4HI
| GC|NGC |
55, 360 |
HaeII
| PuGCGC|Py |
58 |
HaeIII
| GG|CC |
5, 25, 44, 255, 322, 337, 463 |
HhaI
| GCG|C |
57 |
HinP1I
| G|CGC |
57 |
HincII
| GTPy|PuAC |
418 |
HinfI
| G|ANTC |
74, 290, 545 |
HpaII
| C|CGG |
51, 339, 363, 369 |
Hpy188I
| TCN|GA |
114, 407, 453, 561 |
HpyCH4III
| ACN|GT |
120, 394 |
HpyCH4IV
| A|CGT |
177 |
HpyCH4V
| TG|CA |
457 |
MboI
| |GATC |
1, 125, 167, 215, 446 |
MscI
| TGG|CCA |
256, 464 |
MseI
| T|TAA |
210 |
MslI
| CAPyNN|NNPuTG |
627 |
MspI
| C|CGG |
51, 339, 363, 369 |
MwoI
| GCNNNNN|NNGC |
52, 87, 106, 321, 366 |
N.BstNBI
| GAGTCNNNN|N |
79 |
NaeI
| GCC|GGC |
370 |
NciI
| CC|[CG]GG |
51, 340 |
NcoI
| C|CATGG |
389, 622 |
NgoMIV
| G|CCGGC |
370 |
NlaIII
| CATG| |
130, 283, 388, 523, 621 |
NlaIV
| GGN|NCC |
160, 367 |
NsiI
| ATGCA|T |
458 |
PspGI
| |CC[AT]GG |
443 |
RsaI
| GT|AC |
430 |
SacI
| GAGCT|C |
34 |
Sau3AI
| |GATC |
1, 125, 167, 215, 446 |
ScrFI
| CC|NGG |
51, 340, 443 |
SfcI
| C|TPuPyAG |
273 |
SmlI
| C|TPyPuAG |
22, 424 |
StyI
| C|C[AT][AT]GG |
194, 389, 622 |
TfiI
| G|A[AT]TC |
545 |
TseI
| G|C[AT]GC |
360 |
Tsp45I
| |GT[CG]AC |
595 |
TspRI
| NNCA[CG]TGNN| |
331 |
XcmI
| CCANNNNN|NNNNTGG |
92 |
Click here to view TAIR data
>AT3G23050.2 length:633
ATGATCGGCC AACTTATGAA CCTCAAGGCC ACGGAGCTCT GTCTCGGCCT | 50 |
CCCCGGCGGC GCTGAAGCAG TTGAGAGTCC TGCCAAATCG GCGGTGGGAA | 100 |
GCAAGAGAGG CTTCTCCGAA ACCGTTGATC TCATGCTCAA TCTTCAATCT | 150 |
AACAAAGAAG GCTCCGTTGA TCTCAAAAAC GTTTCTGCTG TTCCCAAGGA | 200 |
GAAGACTACC CTTAAAGATC CTTCTAAGCC TCCTGCTAAA GCACAAGTGG | 250 |
TGGGATGGCC ACCTGTGAGG AACTACAGGA AGAACATGAT GACTCAGCAG | 300 |
AAGACCAGTA GTGGTGCGGA GGAGGCCAGC AGTGAGAAGG CCGGGAACTT | 350 |
TGGTGGAGGA GCAGCCGGAG CCGGCTTGGT GAAGGTCTCC ATGGACGGTG | 400 |
CTCCATATCT GAGGAAAGTT GACCTCAAGA TGTACAAAAG CTACCAGGAT | 450 |
CTTTCTGATG CATTGGCCAA AATGTTCAGC TCCTTTACTA TGGGAAACTA | 500 |
TGGAGCACAA GGAATGATAG ATTTCATGAA CGAGAGCAAG CTAATGAATC | 550 |
TGCTGAATAG CTCTGAGTAT GTGCCAAGCT ACGAGGACAA AGATGGTGAC | 600 |
TGGATGCTCG TTGGCGATGT CCCATGGGAG TGA | 650 |
>AT3G23050.2 longest ORF length:210
MIGQLMNLKA TELCLGLPGG AEAVESPAKS AVGSKRGFSE TVDLMLNLQS | 50 |
NKEGSVDLKN VSAVPKEKTT LKDPSKPPAK AQVVGWPPVR NYRKNMMTQQ | 100 |
KTSSGAEEAS SEKAGNFGGG AAGAGLVKVS MDGAPYLRKV DLKMYKSYQD | 150 |
LSDALAKMFS SFTMGNYGAQ GMIDFMNESK LMNLLNSSEY VPSYEDKDGD | 200 |
WMLVGDVPWE | 250 |
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