fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G23050 AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2)

>AT3G23050.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, , NarI, NdeI, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Taqƒ¿I, TliI, Tsp509I, Tth111I, XbaI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AclI AA|CGTT 178
AluI AG|CT 33, 437, 476, 537, 557, 575
BalI TGG|CCA 256, 464
BanII GPuGCPy|C 34
BglI GCCNNNN|NGGC 52, 87
BsaJI C|CNNGG 29, 51, 194, 389, 622
BsiHKAI G[AT]GC[AT]|C 34, 398, 503
Bsp1286I G[GAT]GC[CAT]|C 34, 398, 503
BspHI T|CATGA 524
BsrFI Pu|CCGGPy 370
BsrGI T|GTACA 431
BsrI ACTGGN| 599
BssKI |CCNGG 51, 340, 443
BstF5I GGATGNN| 254, 603
BstNI CC|[AT]GG 443
BstYI Pu|GATCPy 216, 447
BtgI C|CPuPyGG 29, 389, 622
BtsI GCAGTGNN| 331
Cac8I GCN|NGC 325, 370, 536
Cfr10I [AG]|CCGG[TC] 370
DdeI C|TNAG 223, 292, 408, 562
DpnI GA-CH3|TC 1, 125, 167, 215, 446
DpnII |GATC 1, 125, 167, 215, 446
EaeI Py|GGCCPu 6, 256, 464
Fnu4HI GC|NGC 55, 360
HaeII PuGCGC|Py 58
HaeIII GG|CC 5, 25, 44, 255, 322, 337, 463
HhaI GCG|C 57
HinP1I G|CGC 57
HincII GTPy|PuAC 418
HinfI G|ANTC 74, 290, 545
HpaII C|CGG 51, 339, 363, 369
Hpy188I TCN|GA 114, 407, 453, 561
HpyCH4III ACN|GT 120, 394
HpyCH4IV A|CGT 177
HpyCH4V TG|CA 457
MboI |GATC 1, 125, 167, 215, 446
MscI TGG|CCA 256, 464
MseI T|TAA 210
MslI CAPyNN|NNPuTG 627
MspI C|CGG 51, 339, 363, 369
MwoI GCNNNNN|NNGC 52, 87, 106, 321, 366
N.BstNBI GAGTCNNNN|N 79
NaeI GCC|GGC 370
NciI CC|[CG]GG 51, 340
NcoI C|CATGG 389, 622
NgoMIV G|CCGGC 370
NlaIII CATG| 130, 283, 388, 523, 621
NlaIV GGN|NCC 160, 367
NsiI ATGCA|T 458
PspGI |CC[AT]GG 443
RsaI GT|AC 430
SacI GAGCT|C 34
Sau3AI |GATC 1, 125, 167, 215, 446
ScrFI CC|NGG 51, 340, 443
SfcI C|TPuPyAG 273
SmlI C|TPyPuAG 22, 424
StyI C|C[AT][AT]GG 194, 389, 622
TfiI G|A[AT]TC 545
TseI G|C[AT]GC 360
Tsp45I |GT[CG]AC 595
TspRI NNCA[CG]TGNN| 331
XcmI CCANNNNN|NNNNTGG 92


Click here to view TAIR data

>AT3G23050.2 length:633
ATGATCGGCC AACTTATGAA CCTCAAGGCC ACGGAGCTCT GTCTCGGCCT 
50
CCCCGGCGGC GCTGAAGCAG TTGAGAGTCC TGCCAAATCG GCGGTGGGAA 
100
GCAAGAGAGG CTTCTCCGAA ACCGTTGATC TCATGCTCAA TCTTCAATCT 
150
AACAAAGAAG GCTCCGTTGA TCTCAAAAAC GTTTCTGCTG TTCCCAAGGA 
200
GAAGACTACC CTTAAAGATC CTTCTAAGCC TCCTGCTAAA GCACAAGTGG 
250
TGGGATGGCC ACCTGTGAGG AACTACAGGA AGAACATGAT GACTCAGCAG 
300
AAGACCAGTA GTGGTGCGGA GGAGGCCAGC AGTGAGAAGG CCGGGAACTT 
350
TGGTGGAGGA GCAGCCGGAG CCGGCTTGGT GAAGGTCTCC ATGGACGGTG 
400
CTCCATATCT GAGGAAAGTT GACCTCAAGA TGTACAAAAG CTACCAGGAT 
450
CTTTCTGATG CATTGGCCAA AATGTTCAGC TCCTTTACTA TGGGAAACTA 
500
TGGAGCACAA GGAATGATAG ATTTCATGAA CGAGAGCAAG CTAATGAATC 
550
TGCTGAATAG CTCTGAGTAT GTGCCAAGCT ACGAGGACAA AGATGGTGAC 
600
TGGATGCTCG TTGGCGATGT CCCATGGGAG TGA
650

>AT3G23050.2 longest ORF length:210
MIGQLMNLKA TELCLGLPGG AEAVESPAKS AVGSKRGFSE TVDLMLNLQS 
50
NKEGSVDLKN VSAVPKEKTT LKDPSKPPAK AQVVGWPPVR NYRKNMMTQQ 
100
KTSSGAEEAS SEKAGNFGGG AAGAGLVKVS MDGAPYLRKV DLKMYKSYQD 
150
LSDALAKMFS SFTMGNYGAQ GMIDFMNESK LMNLLNSSEY VPSYEDKDGD 
200
WMLVGDVPWE 
250