fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G24120 Homeodomain-like superfamily protein (.1.2)

>AT3G24120.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NotI, PacI, PstI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 542
NcoI C|CATGG 57
NheI G|CTAGC 615
PvuII CAG|CTG 493
SacI GAGCT|C 786
StyI C|C[AT][AT]GG 57, 282


Click here to view TAIR data

>AT3G24120.1 length:888
ATGTACTCAG CGATTCGCTC GCTTCCACTC GATGGTGGAC ACGTTGGTGG 
50
TGACTACCAT GGACCTCTTG ACGGAACCAA TCTTCCCGGT GACGCTTGTT 
100
TGGTTTTAAC GACTGACCCT AAACCTCGTC TCCGGTGGAC AACTGAGCTT 
150
CATGAGAGAT TCGTTGACGC CGTTACTCAG CTCGGTGGTC CTGACAAAGC 
200
GACTCCCAAA ACTATTATGA GAACAATGGG AGTGAAGGGT CTCACTCTCT 
250
ACCACCTCAA ATCACATCTT CAGAAATTCC GCCTAGGGAG GCAAGCTGGC 
300
AAAGAATCAA CTGAGAACTC TAAAGATGCT TCTTGTGTAG GGGAGAGTCA 
350
GGACACAGGT TCATCTTCGA CATCATCAAT GAGAATGGCG CAGCAGGAGC 
400
AGAACGAGGG TTACCAAGTC ACCGAAGCTC TACGTGCTCA GATGGAAGTC 
450
CAAAGAAGAC TACACGATCA ATTGGAGGTG CAACGGAGGC TCCAGCTGAG 
500
GATAGAGGCA CAAGGAAAAT ACCTGCAATC GATTCTTGAA AAAGCTTGCA 
550
AGGCCTTTGA CGAGCAAGCT GCTACTTTTG CTGGACTTGA GGCTGCTAGG 
600
GAAGAGCTAT CAGAGCTAGC CATCAAAGTC TCCAATAGCT CTCAAGGAAC 
650
ATCAGTCCCG TACTTCGATG CAACAAAGAT GATGATGATG CCATCGTTGT 
700
CAGAGCTTGC AGTAGCAATA GACAACAAAA ACAACATCAC AACCAACTGT 
750
TCAGTAGAAA GCTCTCTGAC TTCCATCACA CATGGGAGCT CTATATCTGC 
800
TGCATCAATG AAGAAGCGTC AACGTGGAGA CAATTTGGGC GTAGGGTATG 
850
AATCAGGCTG GATTATGCCT AGTAGCACCA TTGGATAA
900

>AT3G24120.1 longest ORF length:295
MYSAIRSLPL DGGHVGGDYH GPLDGTNLPG DACLVLTTDP KPRLRWTTEL 
50
HERFVDAVTQ LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKFRLGRQAG 
100
KESTENSKDA SCVGESQDTG SSSTSSMRMA QQEQNEGYQV TEALRAQMEV 
150
QRRLHDQLEV QRRLQLRIEA QGKYLQSILE KACKAFDEQA ATFAGLEAAR 
200
EELSELAIKV SNSSQGTSVP YFDATKMMMM PSLSELAVAI DNKNNITTNC 
250
SVESSLTSIT HGSSISAASM KKRQRGDNLG VGYESGWIMP SSTIG
300